Evidence map›Paper›PMID 21127057›Full record

ArticleThe Journal of biological chemistry2011

The T cell receptor beta-chain second complementarity determining region loop (CDR2beta governs T cell activation and Vbeta specificity by bacterial superantigens.

A K M Nur-ur Rahman, Daniel A Bonsor, Christine A Herfst, Fraser Pollard, Michael Peirce, Aaron W Wyatt, Katherine J Kasper, Joaquín Madrenas, Eric J Sundberg, John K McCormick

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Autoimmunity: A New Focus on Nasal Polyps.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Staphylococcal superantigens in colonization and disease.Frontiers in cellular and infection microbiology · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

A K M Nur-ur RahmanDepartment of Microbiology and Immunology, The University of Western Ontario, London, Ontario N6A 5C1, Canada.
Daniel A Bonsor
Christine A Herfst
Fraser Pollard
Michael Peirce
Aaron W Wyatt
Katherine J Kasper
Joaquín Madrenas
Eric J Sundberg
John K McCormick
Western University · CABoston Biomedical Research Institute · USLawson Health Research Institute · CA

Funding

Development of Superantigen AntagonistsR01AI065690 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI SUNDBERG, ERIC JOHN · 2008 to 2011
$1.8M
CIHRNIAID NIH HHS AI065690NIAID NIH HHS R01 AI065690
6 · The paper itself

Abstract

Superantigens (SAgs) are microbial toxins defined by their ability to activate T lymphocytes in a T cell receptor (TCR) β-chain variable domain (Vβ)-specific manner. Although existing structural information indicates that diverse bacterial SAgs all uniformly engage the Vβ second complementarity determining region (CDR2β) loop, the molecular rules that dictate SAg-mediated T cell activation and Vβ specificity are not fully understood. Herein we report the crystal structure of human Vβ2.1 (hVβ2.1) in complex with the toxic shock syndrome toxin-1 (TSST-1) SAg, and mutagenesis of hVβ2.1 indicates that the non-canonical length of CDR2β is a critical determinant for recognition by TSST-1 as well as the distantly related SAg streptococcal pyrogenic exotoxin C. Frame work (FR) region 3 is uniquely critical for TSST-1 function explaining the fine Vβ-specificity exhibited by this SAg. Furthermore, domain swapping experiments with SAgs, which use distinct domains to engage both CDR2β and FR3/4β revealed that the CDR2β contacts dictate T lymphocyte Vβ-specificity. These findings demonstrate that the TCR CDR2β loop is the critical determinant for functional recognition and Vβ-specificity by diverse bacterial SAgs.

Indexed as

Lymphocyte ActivationBacterial ProteinsBacterial ToxinsCell LineComplementarity Determining RegionsCrystallography, X-RayEnterotoxinsExotoxinsHumansMutagenesisProtein Structure, QuaternaryProtein Structure, TertiaryReceptors, Antigen, T-Cell, alpha-betaSuperantigensT-LymphocytesBacterial ProteinsBacterial ToxinsComplementarity Determining Regionsenterotoxin F, StaphylococcalEnterotoxinserythrogenic toxinExotoxinsReceptors, Antigen, T-Cell, alpha-betaSuperantigens

Identifiers

PMID21127057
PMCPMC3039367
OpenAlexW1984483756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.