Evidence map›Paper›PMID 21124729›Full record

ArticlePLoS genetics2010

Conserved genes act as modifiers of invertebrate SMN loss of function defects.

Maria Dimitriadi, James N Sleigh, Amy Walker, Howard C Chang, Anindya Sen, Geetika Kalloo, Jevede Harris, Tom Barsby, Melissa B Walsh, John S Satterlee and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 101 citations in OpenAlex.

  1. Trial
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  9. Article
  10. Review
  11. Mitochondrial Dysfunction in Spinal Muscular Atrophy.International journal of molecular sciences · 2022
    Review
  12. Review
  13. Article
  14. Review
  15. Plastin 3 in health and disease: a matter of balance.Cellular and molecular life sciences : CMLS · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 3 countries.

Maria DimitriadiDepartment of Neuroscience, Brown University, Providence, Rhode Island, USA.
James N Sleigh
Amy Walker
Howard C Chang
Anindya Sen
Geetika Kalloo
Jevede Harris
Tom Barsby
Melissa B Walsh
John S Satterlee
Chris Li
David Van Vactor
Spyros Artavanis-Tsakonas
Anne C Hart
Brown University · USHarvard University · USMassachusetts General Hospital · USUniversity of Bath · GBCenter for Cancer Research · USCity College · USCollège de France · FR

Funding

TNC FUNCTION IN APOPTOTIC ANTIGEN DRIVEN AUTOIMMUNITYG12RR003060 · NCRR · CITY COLLEGE OF NEW YORK · PI GUYDEN, JERRY · 1985 to 2011
$26.1M
Smn Regulation of Neuromuscular Morphogenesis in DrosophilaP01NS066888 · NINDS · HARVARD MEDICAL SCHOOL · PI ARTAVANIS-TSAKONAS, SPYRIDON · 2010 to 2014
$6.7M
Function of a Neuropeptide Gene Family in C. elegansR01NS042459 · NINDS · CITY COLLEGE OF NEW YORK · PI LI, CHRISTINE · 2002 to 2006
$1.4M
CELL INTERACTIONS CONTROLLING NEURAL DIFFERENTIATIONR01NS026084 · NINDS · YALE UNIVERSITY · PI ARTAVANIS-TSAKONAS, SPYRIDON · 1988 to 2003
$839k
NCRR NIH HHS G12 RR003060NCRR NIH HHS G12-RR03060NINDS NIH HHS P01 NS066888NINDS NIH HHS R01 NS026084NINDS NIH HHS R01 NS042459NINDS NIH HHS R01 NS26084NINDS NIH HHS R01 NS42459
6 · The paper itself

Abstract

Spinal Muscular Atrophy (SMA) is caused by diminished function of the Survival of Motor Neuron (SMN) protein, but the molecular pathways critical for SMA pathology remain elusive. We have used genetic approaches in invertebrate models to identify conserved SMN loss of function modifier genes. Drosophila melanogaster and Caenorhabditis elegans each have a single gene encoding a protein orthologous to human SMN; diminished function of these invertebrate genes causes lethality and neuromuscular defects. To find genes that modulate SMN function defects across species, two approaches were used. First, a genome-wide RNAi screen for C. elegans SMN modifier genes was undertaken, yielding four genes. Second, we tested the conservation of modifier gene function across species; genes identified in one invertebrate model were tested for function in the other invertebrate model. Drosophila orthologs of two genes, which were identified originally in C. elegans, modified Drosophila SMN loss of function defects. C. elegans orthologs of twelve genes, which were originally identified in a previous Drosophila screen, modified C. elegans SMN loss of function defects. Bioinformatic analysis of the conserved, cross-species, modifier genes suggests that conserved cellular pathways, specifically endocytosis and mRNA regulation, act as critical genetic modifiers of SMN loss of function defects across species.

Indexed as

RNA InterferenceAnalysis of VarianceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsDrosophila melanogasterDrosophila ProteinsEvolution, MolecularFemaleGenome, HelminthGenome, InsectGenome-Wide Association StudyHumansInvertebratesMaleMuscular Atrophy, SpinalCaenorhabditis elegans ProteinsDrosophila ProteinsSMN Complex Proteins

Identifiers

PMID21124729
PMCPMC2965752
OpenAlexW2099118635

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.