Evidence map›Paper›PMID 21123754›Full record

ArticleNeurology2011

Genome-wide association study of CSF biomarkers Abeta1-42, t-tau, and p-tau181p in the ADNI cohort.

S Kim, S Swaminathan, L Shen, S L Risacher, K Nho, T Foroud, L M Shaw, J Q Trojanowski, S G Potkin, M J Huentelman and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Neurology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 13 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 13 syntheses or guidelines pooled it, 203 citations in OpenAlex.

  1. Pooled it
  2. Genome-Wide Meta-Analysis of Cerebrospinal Fluid Biomarkers in Alzheimer's Disease and Parkinson's Disease Cohorts.Movement disorders : official journal of the Movement Disorder Society · 2023
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  14. Trial
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  16. Plasma proteomics for the identification of Alzheimer disease.Alzheimer disease and associated disorders
    Trial
  17. Review
  18. New Genetic Associations Between Alzheimer's Disease and Its Key Risk Factors.Psychogeriatrics : the official journal of the Japanese Psychogeriatric Society · 2026
    Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 3 institutions in 1 country.

S KimCenter for Neuroimaging, Department of Radiology and Imaging Sciences, Indiana University School of Medicine, 950 West Walnut Street, R2 E124, Indianapolis, IN 46202, USA.
S Swaminathan
L Shen
S L Risacher
K Nho
T Foroud
L M Shaw
J Q Trojanowski
S G Potkin
M J Huentelman
D W Craig
B M DeChairo
P S Aisen
R C Petersen
M W Weiner
A J Saykin
Alzheimer's Disease Neuroimaging Initiative
Indiana University Bloomington · USPfizer (United States) · USRegenstrief Institute · US

Funding

Project 1U19AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI MONICA G. RIVERA-MINDT · 2016 to 2026
$226.7M
Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
TRIAL OF VALPROATE TO ATTENUATE THE PROGRESSION OF ADU01AG010483 · NIA · UNIVERSITY OF ROCHESTER · PI AISEN, PAUL S. · 1991 to 2012
$116.2M
RECRUITMENT COREU19AG010483 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FELDMAN, HOWARD · 2013 to 2020
$80.6M
TDP-43 Loss-of-Function: Biology to BiomarkersP01AG019724 · NIA · UNIVERSITY OF PENNSYLVANIA · PI BRUCE L MILLER · 2002 to 2026
$67.2M
Alzheimer's Disease Genetics ConsortiumU01AG032984 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SCHELLENBERG, GERARD DAVID · 2009 to 2024
$60.4M
SUPPLEMENT TO ALZHEIMERS DISEASE PATIENT REGISTRYU01AG006786 · NIA · MAYO CLINIC ROCHESTER · PI GRAFF-RADFORD, JONATHAN, JACK, CLIFFORD R. · 1986 to 2023
$49.6M
Research Education ComponentP30AG010133 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI FOROUD, TATIANA M. · 1991 to 2020
$37.3M
Transgenic Mouse Models of Tau PathologiesP01AG017586 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2000 to 2021
$37.3M
THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI VEMURI, PRASHANTHI · 1999 to 2018
$36.9M
UPenn ADCC Biomarker CoreP30AG010124 · NIA · UNIVERSITY OF PENNSYLVANIA · PI TROJANOWSKI, JOHN Q. · 1991 to 2020
$35.1M
NCI NIH HHS R01 CA101318NCI NIH HHS R01 CA141668NCRR NIH HHS P20 RR020837NCRR NIH HHS P41 RR023953NCRR NIH HHS U24 RR021992NCRR NIH HHS UL1 RR025761NHLBI NIH HHS U01 HL086528NIAAA NIH HHS U01 AA014809NIAMS NIH HHS R01 AR047822NIA NIH HHS AG010129NIA NIH HHS AG024904NIA NIH HHS AG030514NIA NIH HHS AG032984NIA NIH HHS K01 AG030514NIA NIH HHS P01 AG009215NIA NIH HHS P01 AG012435NIA NIH HHS P01 AG017586NIA NIH HHS P01 AG018397NIA NIH HHS P01 AG019724NIA NIH HHS P30 AG010124NIA NIH HHS P30 AG010129NIA NIH HHS P30 AG010133NIA NIH HHS P30 AG019610NIA NIH HHS P30 AG036468NIA NIH HHS P50 AG016574NIA NIH HHS P50 AG023501NIA NIH HHS R01 AG010897NIA NIH HHS R01 AG011378NIA NIH HHS R01 AG016381NIA NIH HHS R01 AG019771NIA NIH HHS R01 AG022374NIA NIH HHS R01 AG027342NIA NIH HHS R01 AG030048NIA NIH HHS RC2 AG036535NIA NIH HHS U01 AG006786NIA NIH HHS U01 AG010483NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG029213NIA NIH HHS U01 AG032984NIA NIH HHS U19 AG010483NIA NIH HHS U19 AG024904NIA NIH HHS U24 AG021886NIBIB NIH HHS R03 EB008674NIMH NIH HHS R01 MH078151NINDS NIH HHS N01 NS032357NINDS NIH HHS P50 NS053488NINDS NIH HHS R01 NS031966NINDS NIH HHS R01 NS037167NINDS NIH HHS R01 NS059873NLM NIH HHS T15 LM007117
6 · The paper itself

Abstract

objectivesCSF levels of Aβ1-42, t-tau, and p-tau181p are potential early diagnostic markers for probable Alzheimer disease (AD). The influence of genetic variation on these markers has been investigated for candidate genes but not on a genome-wide basis. We report a genome-wide association study (GWAS) of CSF biomarkers (Aβ1-42, t-tau, p-tau181p, p-tau181p/Aβ1-42, and t-tau/Aβ1-42).

methodsA total of 374 non-Hispanic Caucasian participants in the Alzheimer's Disease Neuroimaging Initiative cohort with quality-controlled CSF and genotype data were included in this analysis. The main effect of single nucleotide polymorphisms (SNPs) under an additive genetic model was assessed on each of 5 CSF biomarkers. The p values of all SNPs for each CSF biomarker were adjusted for multiple comparisons by the Bonferroni method. We focused on SNPs with corrected p<0.01 (uncorrected p<3.10×10(-8)) and secondarily examined SNPs with uncorrected p values less than 10(-5) to identify potential candidates.

resultsFour SNPs in the regions of the APOE, LOC100129500, TOMM40, and EPC2 genes reached genome-wide significance for associations with one or more CSF biomarkers. SNPs in CCDC134, ABCG2, SREBF2, and NFATC4, although not reaching genome-wide significance, were identified as potential candidates.

conclusionsIn addition to known candidate genes, APOE, TOMM40, and one hypothetical gene LOC100129500 partially overlapping APOE; one novel gene, EPC2, and several other interesting genes were associated with CSF biomarkers that are related to AD. These findings, especially the new EPC2 results, require replication in independent cohorts.

Indexed as

Alzheimer DiseaseAgedAged, 80 and overAmyloid beta-PeptidesAntigens, NeoplasmApolipoproteins ECognition DisordersCohort StudiesDiagnostic ImagingFemaleGenome-Wide Association StudyGenotypeHumansLinkage DisequilibriumMaleMembrane Transport ProteinsAmyloid beta-Peptidesamyloid beta-protein (1-42)Antigens, NeoplasmApolipoproteins Eearly prostate cancer antigen-2, humanMembrane Transport ProteinsMitochondrial Precursor Protein Import Complex ProteinsPeptide Fragmentstau ProteinsThreonineTOMM40 protein, human

Identifiers

PMID21123754
PMCPMC3030225
OpenAlexW2073483498

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.