Evidence map›Paper›PMID 21119596›Full record

ArticleOncogene2011

A Variant in a MicroRNA complementary site in the 3' UTR of the KIT oncogene increases risk of acral melanoma.

S E Godshalk, T Paranjape, S Nallur, W Speed, E Chan, A M Molinaro, A Bacchiocchi, K Hoyt, K Tworkoski, D F Stern and 7 more

Open access · greenAbstract read
In one paragraph

Article in Oncogene, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. More than just acral melanoma: the controversies of defining the disease.The journal of pathology. Clinical research · 2021
    Review
  4. Review
  5. Article
  6. Article
  7. Emerging Biomarkers in Cutaneous Melanoma.Molecular diagnosis & therapy · 2018
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Control by a hair's breadth: the role of microRNAs in the skin.Cellular and molecular life sciences : CMLS · 2013
    Review
  15. Review
  16. Article
  17. MicroRNA signatures differentiate melanoma subtypes.Cell cycle (Georgetown, Tex.) · 2011
    Article
  18. MiR-146a in Immunity and Disease.Molecular biology international · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

S E GodshalkDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA.
T Paranjape
S Nallur
W Speed
E Chan
A M Molinaro
A Bacchiocchi
K Hoyt
K Tworkoski
D F Stern
M Sznol
S Ariyan
R Lazova
R Halaban
K K Kidd
J B Weidhaas
F J Slack
Yale University · US

Funding

YALE UNIVERSITY CLINICAL AND TRANSLATIONAL SCIENCE AWARD PROGRAMUL1RR024139 · NCRR · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2006 to 2011
$56.8M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI DAVID F STERN · 2006 to 2026
$43.9M
Theoretical Studies of Linkage DisequilibriumP01GM057672 · NIGMS · YALE UNIVERSITY · PI WARD, DAVID C · 1998 to 2008
$11.0M
Defining the Genetic Basis of the Radioresponse Using a C. elegans Tissue ModelK08CA124484 · NCI · YALE UNIVERSITY · PI WEIDHAAS, JOANNE B · 2007 to 2011
$695k
NCI NIH HHS 1 P50 CA121974NCI NIH HHS K08 CA124484NCI NIH HHS P50 CA121974NCRR NIH HHS UL1 RR024139NIGMS NIH HHS 1 P01 GM057672NIGMS NIH HHS P01 GM057672
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small ∼22nt single stranded RNAs that negatively regulate protein expression by binding to partially complementary sequences in the 3' untranslated region (3' UTRs) of target gene messenger RNAs (mRNA). Recently, mutations have been identified in both miRNAs and target genes that disrupt regulatory relationships, contribute to oncogenesis and serve as biomarkers for cancer risk. KIT, an established oncogene with a multifaceted role in melanogenesis and melanoma pathogenesis, has recently been shown to be upregulated in some melanomas, and is also a target of the miRNA miR-221. Here, we describe a genetic variant in the 3' UTR of the KIT oncogene that correlates with a greater than fourfold increased risk of acral melanoma. This KIT variant results in a mismatch in the seed region of a miR-221 complementary site and reporter data suggests that this mismatch can result in increased expression of the KIT oncogene. Consistent with the hypothesis that this is a functional variant, KIT mRNA and protein levels are both increased in the majority of samples harboring the KIT variant. This work identifies a novel genetic marker for increased heritable risk of melanoma.

Indexed as

Oncogenes3' Untranslated RegionsCase-Control StudiesHumansMelanomaMicroRNAsProtein BiosynthesisProto-Oncogene Proteins c-kitRiskRNA, MessengerSkin Neoplasms3' Untranslated RegionsMicroRNAsMIR221, humanProto-Oncogene Proteins c-kitRNA, Messenger

Identifiers

PMID21119596
PMCPMC3069149
OpenAlexW2145126930

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.