Evidence map›Paper›PMID 21118156›Full record

ArticleThe Biochemical journal2011

Target genes of the largest human SWI/SNF complex subunit control cell growth.

Hiroko Inoue, Stavros Giannakopoulos, Christopher N Parkhurst, Tatsushi Matsumura, Evelyn A Kono, Takako Furukawa, Naoko Tanese

Abstract read
In one paragraph

Article in The Biochemical journal, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hiroko InoueDepartment of Microbiology and NYU Cancer Institute, New York University School of Medicine, 550 First Avenue, New York, NY 10016-6481, U.S.A.
Stavros Giannakopoulos
Christopher N Parkhurst
Tatsushi Matsumura
Evelyn A Kono
Takako Furukawa
Naoko Tanese
New York University · US

Funding

Role of the Huntington's Disease Protein in Post-Transcriptional Gene SilencingR01NS061917 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TANESE, NAOKO · 2009 to 2013
$2.0M
NINDS NIH HHS R01 NS061917
6 · The paper itself

Abstract

The largest subunit of the mammalian SWI/SNF-A or BAF (BRG1-associated factor) chromatin-remodelling complex is encoded by two related cDNAs hOsa1/BAF250a and hOsa2/BAF250b that are unique to the BAF complex and absent in the related PBAF (Polybromo BAF). hOsa/BAF250 has been shown to interact with transcriptional activators and bind to DNA suggesting that it acts to target the remodelling complex to chromatin. To better understand the functions of hOsa2, we established inducible stable HeLa cell lines over-expressing FLAG-hOsa2 or a derivative lacking the ARID (AT-rich interactive domain) DNA-binding domain. Immunopurification of complexes containing hOsa2 that was followed by mass spectrometry and immunoblotting demonstrated the presence of BRG1 and known BAFs, but not hOsa1 or hBRM. Deletion of the ARID did not compromise the integrity of the complex. Induction of hOsa2 expression caused impaired cell growth and accumulation of cells in the G0/G1 cell cycle phase. Elevated levels of the p53 and p21 proteins were detected in these cells while c-Myc mRNA and protein levels were found to decrease. Chromatin immunoprecipitation and reporter assays suggested that hOsa2 had a direct effect on c-myc and p21 promoter activity. Thus hOsa2 plays an important role in controlling genes regulating the cell cycle.

Indexed as

Cell ProliferationChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase Inhibitor p21Gene Expression RegulationGenes, mycHeLa CellsHumansPromoter Regions, GeneticProtein SubunitsTranscription FactorsTumor Suppressor Protein p53CDKN1A protein, humanChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase Inhibitor p21Protein SubunitsSWI-SNF-B chromatin-remodeling complexTranscription FactorsTumor Suppressor Protein p53

Identifiers

PMID21118156
PMCPMC4090146
OpenAlexW2012987953

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.