Evidence map›Paper›PMID 21117063›Full record

ArticleJournal of cellular biochemistry2011

Suppression of HIV-1 transcriptional elongation by a DING phosphatase.

Nune Darbinian, Rebeccah Gomberg, Loriann Mullen, Samantha Garcia, Martyn K White, Kamel Khalili, Shohreh Amini

Open access · greenAbstract read
In one paragraph

Article in Journal of cellular biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. DING Proteins Extend to the Extremophilic World.International journal of molecular sciences · 2021
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. DING proteins: numerous functions, elusive genes, a potential for health.Cellular and molecular life sciences : CMLS · 2013
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nune DarbinianDepartment of Neuroscience, Temple University School of Medicine, Philadelphia, PA 19140, USA.
Rebeccah Gomberg
Loriann Mullen
Samantha Garcia
Martyn K White
Kamel Khalili
Shohreh Amini
Temple University · US

Funding

TAT induced deregulation of neuronal differentiation and survival by NGFP01NS043980 · NINDS · TEMPLE UNIV OF THE COMMONWEALTH · PI AMINI, SHOHREH · 2002 to 2012
$11.5M
Project 3 Dysregulation of metabolic communication of oligodendrocytes and neurons by cocaine and TatP01DA037830 · NIDA · TEMPLE UNIV OF THE COMMONWEALTH · PI KHALILI, KAMEL · 2015 to 2019
$7.4M
Suppression of HIV-1 in CNS by a novel protein from ST John's WortR01MH074392 · NIMH · TEMPLE UNIV OF THE COMMONWEALTH · PI AMINI, SHOHREH · 2006 to 2010
$1.6M
NIDA NIH HHS P01 DA037830NIMH NIH HHS R01 MH074392NINDS NIH HHS P01 NS043980
6 · The paper itself

Abstract

HIV-1 gene transcription is controlled by the cooperation of viral and host factors which bind to specific DNA sequences within the viral promoter spanning the long terminal repeat (LTR). Previously we showed that the St. John's Wort DING phosphatase, p27SJ, suppresses HIV-1 gene transcription by binding to the viral protein Tat and preventing its nuclear import. Here, we describe the inhibitory effect of p27SJ on the phosphorylation of the C-terminal domain (CTD) of RNA polymerase II (RNAPII). This inhibition leads to the suppression of the association of RNAPII with the LTR. Inhibition of binding of RNAPII to LTR by p27SJ resulted in the suppression of LTR transcription elongation and a decrease in LTR transcriptional activity. Another form of the St. John's Wort DING phosphatase, p38SJ, also suppressed binding of RNAPII to the LTR, reduced transcription elongation and was even more powerful than p27SJ in inhibiting the transcriptional activity of the LTR. Our data suggest a possible mechanism by which the p27SJ/p38SJ DING phosphatase can regulate HIV-1 LTR expression by inhibiting phosphorylation of the CTD of RNAPII and suppressing LTR transcription elongation.

Indexed as

Transcription, GeneticGlioblastomaHIV-1HIV Long Terminal RepeatHumansPhosphoric Monoester HydrolasesPlant ProteinsPromoter Regions, GeneticRNA Polymerase IIPhosphoric Monoester HydrolasesPlant ProteinsRNA Polymerase II

Identifiers

PMID21117063
PMCPMC4503254
OpenAlexW2034956606

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.