ArticleJournal of proteomics & bioinformatics2010
Statistical Analyses of Next Generation Sequence Data: A Partial Overview.
Article in Journal of proteomics & bioinformatics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
15 citing papers in PubMed.
- Identification of the Genetic Variation and Gene Exchange betweenBiomolecules · 2018Article
- Genome-wide genetic variation and comparison of fruit-associated traits between kumquat (Citrus japonica) and Clementine mandarin (Citrus clementina).Plant molecular biology · 2018Article
- Identifying the genome-wide genetic variation between precocious trifoliate orange and its wild type and developing new markers for genetics research.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- UrQt: an efficient software for the Unsupervised Quality trimming of NGS data.BMC bioinformatics · 2015Article
- De novo assembly and transcriptome analysis of two contrary tillering mutants to learn the mechanisms of tillers outgrowth in switchgrass (Panicum virgatum L.).Frontiers in plant science · 2015Article
- A survey of tools for variant analysis of next-generation genome sequencing data.Briefings in bioinformatics · 2014Article
- Experience of targeted Usher exome sequencing as a clinical test.Molecular genetics & genomic medicine · 2014Article
- Article
- Development of InDel markers for Brassica rapa based on whole-genome re-sequencing.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Technical and biological variance structure in mRNA-Seq data: life in the real world.BMC genomics · 2012Article
- Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges.Frontiers in genetics · 2012Article
- DNA methylation screening and analysis.Methods in molecular biology (Clifton, N.J.) · 2012Article
- Base-calling for next-generation sequencing platforms.Briefings in bioinformatics · 2011Review
- Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.Bioinformatics (Oxford, England) · 2011Article
- Estimation of allele frequency and association mapping using next-generation sequencing data.BMC bioinformatics · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
Next generation sequencing has revolutionized the status of biological research. For a long time, the gold standard of DNA sequencing was considered to be the Sanger method. However, in 2005, commercial launching of next generation sequencing has made it possible to generate massively parallel and high resolution DNA sequence data. Its usefulness in various genomic applications such as genome-wide detection of SNPs, DNA methylation profiling, mRNA expression profiling, whole-genome re-sequencing and so on are now well recognized. There are several platforms for generating next generation sequencing (NGS) data which we briefly discuss in this mini overview. With new technologies come new challenges for the data analysts. This mini review attempts to present a collection of selected topics in the current development of statistical methods dealing with these novel data types. We believe that knowing the advances and bottlenecks of this technology will help the researchers to benchmark the analytical tools dealing with these data and will pave the path for its proper application into clinical diagnostics.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.