Evidence map›Paper›PMID 21113165›Full record

ArticleNature biotechnology2010

Scalable gene synthesis by selective amplification of DNA pools from high-fidelity microchips.

Sriram Kosuri, Nikolai Eroshenko, Emily M Leproust, Michael Super, Jeffrey Way, Jin Billy Li, George M Church

Abstract read
In one paragraph

Article in Nature biotechnology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed.

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  15. Review
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  17. Article
  18. Inert splint-driven oligonucleotide assembly.Synthetic biology (Oxford, England) · 2024
    Article
  19. ArrayedbioRxiv : the preprint server for biology · 2023
    Article
  20. Article

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Sriram KosuriWyss Institute for Biologically Inspired Engineering, Boston, Massachusetts, USA. sri.kosuri@wyss.harvard.edu
Nikolai Eroshenko
Emily M Leproust
Michael Super
Jeffrey Way
Jin Billy Li
George M Church

Funding

Causal Transcriptional Consequences of Human Genetic VariationP50HG005550 · NHGRI · HARVARD MEDICAL SCHOOL · PI CHURCH, GEORGE M · 2010 to 2014
$19.0M
Molecular and Genomic Imaging CenterP50HG003170 · NHGRI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHURCH, GEORGE M · 2004 to 2009
$11.5M
NHGRI NIH HHS P50 HG003170NHGRI NIH HHS P50 HG005550
6 · The paper itself

Abstract

Development of cheap, high-throughput and reliable gene synthesis methods will broadly stimulate progress in biology and biotechnology. Currently, the reliance on column-synthesized oligonucleotides as a source of DNA limits further cost reductions in gene synthesis. Oligonucleotides from DNA microchips can reduce costs by at least an order of magnitude, yet efforts to scale their use have been largely unsuccessful owing to the high error rates and complexity of the oligonucleotide mixtures. Here we use high-fidelity DNA microchips, selective oligonucleotide pool amplification, optimized gene assembly protocols and enzymatic error correction to develop a method for highly parallel gene synthesis. We tested our approach by assembling 47 genes, including 42 challenging therapeutic antibody sequences, encoding a total of ∼35 kilobase pairs of DNA. These assemblies were performed from a complex background containing 13,000 oligonucleotides encoding ∼2.5 megabases of DNA, which is at least 50 times larger than in previously published attempts.

Indexed as

Genes, SyntheticCloning, MolecularDNAHumansNucleic Acid Amplification TechniquesNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisSynthetic BiologyDNA

Identifiers

PMID21113165
PMCPMC3139991

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.