Evidence map›Paper›PMID 21111238›Full record

ArticleCell2010

Abortive HIV infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue.

Gilad Doitsh, Marielle Cavrois, Kara G Lassen, Orlando Zepeda, Zhiyuan Yang, Mario L Santiago, Andrew M Hebbeler, Warner C Greene

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 276 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
276citing papers in PubMed, 1 pooled it
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

276 citing papers in PubMed, 1 synthesis or guideline pooled it, 448 citations in OpenAlex.

  1. The Hitchhiker Guide to CD4Frontiers in immunology · 2021
    Pooled it
  2. Trial
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  11. IFI204 RestrictsMicroorganisms · 2025
    Article
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216 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Gilad DoitshGladstone Institute of Virology and Immunology, San Francisco, CA 94158, USA.
Marielle Cavrois
Kara G Lassen
Orlando Zepeda
Zhiyuan Yang
Mario L Santiago
Andrew M Hebbeler
Warner C Greene
Gladstone Institutes · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
HIV without AIDS: A Radically Different Approach to Help the Developing WorldDP1DA036502 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI GREENE, WARNER C. · 2013 to 2017
$4.9M
NIAID NIH HHS P30 AI027763NIDA NIH HHS DP1 DA036502NIGMS NIH HHS T32 GM007618NIMHD NIH HHS L60 MD003100
6 · The paper itself

Abstract

The mechanism by which CD4 T cells are depleted in HIV-infected hosts remains poorly understood. In ex vivo cultures of human tonsil tissue, CD4 T cells undergo a pronounced cytopathic response following HIV infection. Strikingly, >95% of these dying cells are not productively infected but instead correspond to bystander cells. We now show that the death of these "bystander" cells involves abortive HIV infection. Inhibitors blocking HIV entry or early steps of reverse transcription prevent CD4 T cell death while inhibition of later events in the viral life cycle does not. We demonstrate that the nonpermissive state exhibited by the majority of resting CD4 tonsil T cells leads to accumulation of incomplete reverse transcripts. These cytoplasmic nucleic acids activate a host defense program that elicits a coordinated proapoptotic and proinflammatory response involving caspase-3 and caspase-1 activation. While this response likely evolved to protect the host, it centrally contributes to the immunopathogenic effects of HIV.

Indexed as

ApoptosisCD4-Positive T-LymphocytesCells, CulturedDNA ReplicationDNA, ViralHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansLymphoid TissueDNA, ViralHIV Reverse Transcriptase

Identifiers

PMID21111238
PMCPMC3026834
OpenAlexW2091174536

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.