Evidence map›Paper›PMID 21110520›Full record

ArticleJournal of proteome research2011

Glycoproteomic analysis of glioblastoma stem cell differentiation.

Jintang He, Yashu Liu, Thant S Zhu, Xiaolei Xie, Mark A Costello, Caroline E Talsma, Callie G Flack, Jessica G Crowley, Francesco Dimeco, Angelo L Vescovi and 2 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. The T/Tn-SpecificCancers · 2021
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Analysis of glycoproteins for biomarker discovery.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  9. Discrimination of colon cancer stem cells using noncanonical amino acid.Chemical communications (Cambridge, England) · 2012
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jintang HeDepartment of Surgery, University of Michigan Medical Center, Ann Arbor, Michigan 48109, USA.
Yashu Liu
Thant S Zhu
Xiaolei Xie
Mark A Costello
Caroline E Talsma
Callie G Flack
Jessica G Crowley
Francesco Dimeco
Angelo L Vescovi
Xing Fan
David M Lubman

Funding

Microsequencing in an Ion Trap/reTOF DeviceR01GM049500 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 1994 to 2016
$3.0M
Proteomic Pathways for Pancreatic Cancer Stem CellsR21CA134623 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 2008 to 2009
$367k
A Lectin Glycoarray Approach for Markers of Pancreatic CancerR21CA124441 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUBMAN, DAVID M. · 2007 to 2008
$334k
NCI NIH HHS R21 CA124441NCI NIH HHS R21 CA134623NIGMS NIH HHS R01 GM049500PHS HHS R01 49500
6 · The paper itself

Abstract

Cancer stem cells are responsible for tumor formation through self-renewal and differentiation into multiple cell types and thus represent a new therapeutic target for tumors. Glycoproteins play a critical role in determining the fates of stem cells such as self-renewal, proliferation, and differentiation. Here we applied a multilectin affinity chromatography and quantitative glycoproteomics approach to analyze alterations of glycoproteins relevant to the differentiation of a glioblastoma-derived stem cell line HSR-GBM1. Three lectins including concanavalin A (Con A), wheat germ agglutinin (WGA), and peanut agglutinin (PNA) were used to capture glycoproteins, followed by LC-MS/MS analysis. A total of 73 and 79 high-confidence (FDR < 0.01) glycoproteins were identified from the undifferentiated and differentiated cells, respectively. Label-free quantitation resulted in the discovery of 18 differentially expressed glycoproteins, wherein 9 proteins are localized in the lysosome. All of these lysosomal glycoproteins were up-regulated after differentiation, where their principal function was hydrolysis of glycosyl residues. Protein-protein interaction and functional analyses revealed the active involvement of lysosomes during the process of glioblastoma stem cell differentiation. This work provides glycoprotein markers to characterize differentiation status of glioblastoma stem cells that may be useful in stem-cell therapy of glioblastoma.

Indexed as

Cell DifferentiationBlotting, WesternCell Line, TumorCell ShapeChromatography, AffinityChromatography, LiquidCluster AnalysisDatabases, ProteinGlioblastomaGlycoproteinsHumansLysosomesMicroscopy, Phase-ContrastNeoplastic Stem CellsPlant LectinsProtein Interaction MappingGlycoproteinsPlant Lectins

Identifiers

PMID21110520
PMCPMC3017630

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.