Evidence map›Paper›PMID 21109533›Full record

ArticleNucleic acids research2011

Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer.

Lubomír Dostál, Sichen Shao, Joel F Schildbach

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Structures of TraI in solution.Journal of molecular modeling · 2014
    Article
  15. Article
  16. Review
  17. Catalytic domain of plasmid pAD1 relaxase TraX defines a group of relaxases related to restriction endonucleases.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lubomír DostálDepartment of Biology, Johns Hopkins University, 3400 N. Charles St, Baltimore, MD 21218, USA.
Sichen Shao
Joel F Schildbach
Johns Hopkins University · US

Funding

Molecular Analysis of Tral IE. Coli Helicase 1) FunctionR01GM061017 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI SCHILDBACH, JOEL F · 2002 to 2010
$3.2M
NIGMS NIH HHS GM61017NIGMS NIH HHS R01 GM061017PHS HHS 61017
6 · The paper itself

Abstract

Early in F plasmid conjugative transfer, the F relaxase, TraI, cleaves one plasmid strand at a site within the origin of transfer called nic. The reaction covalently links TraI Tyr16 to the 5'-ssDNA phosphate. Ultimately, TraI reverses the cleavage reaction to circularize the plasmid strand. The joining reaction requires a ssDNA 3'-hydroxyl; a second cleavage reaction at nic, regenerated by extension from the plasmid cleavage site, may generate this hydroxyl. Here we confirm that TraI is transported to the recipient during transfer. We track the secondary cleavage reaction and provide evidence it occurs in the donor and F ssDNA is transferred to the recipient with a free 3'-hydroxyl. Phe substitutions for four Tyr within the TraI active site implicate only Tyr16 in the two cleavage reactions required for transfer. Therefore, two TraI molecules are required for F plasmid transfer. Analysis of TraI translocation on various linear and circular ssDNA substrates supports the assertion that TraI slowly dissociates from the 3'-end of cleaved F plasmid, likely a characteristic essential for plasmid re-circularization.

Indexed as

Conjugation, GeneticAmino Acid SubstitutionDNA CleavageDNA NucleotidyltransferasesDNA, Single-StrandedF FactorTyrosineDNA NucleotidyltransferasesDNA relaxaseDNA, Single-StrandedTyrosine

Identifiers

PMID21109533
PMCPMC3074121
OpenAlexW2014973717

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.