Evidence map›Paper›PMID 21109529›Full record

ArticleNucleic acids research2011

Identification of MBNL1 and MBNL3 domains required for splicing activation and repression.

Ioannis Grammatikakis, Young-Hwa Goo, Gloria V Echeverria, Thomas A Cooper

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
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  6. Disrupting the Molecular Pathway in Myotonic Dystrophy.International journal of molecular sciences · 2021
    Review
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  8. Review
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  11. Article
  12. Article
  13. Review
  14. Mechanistic determinants of MBNL activity.Nucleic acids research · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Ioannis GrammatikakisDepartment of Pathology and Immunology, Baylor College of Medicine, Houston, TX 77030, USA.
Young-Hwa Goo
Gloria V Echeverria
Thomas A Cooper
Baylor College of Medicine · USAlbany Medical Center Hospital · US

Funding

MOLECULAR PATHOGENESIS OF MYOTONIC DYSTROPHYR01AR045653 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1999 to 2018
$8.3M
TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR01HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1996 to 2018
$5.5M
TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR29HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS ALEXANDER · 1991 to 1995
–
NHLBI NIH HHS HL045565NHLBI NIH HHS R01 HL045565NIAMS NIH HHS R01 AR045653
6 · The paper itself

Abstract

Muscleblind-like 1 (MBNL1) is a splicing regulator that controls developmentally regulated alternative splicing of a large number of exons including exon 11 of the Insulin Receptor (IR) gene and exon 5 of the cardiac Troponin T (cTNT) gene. There are three paralogs of MBNL in humans, all of which promote IR exon 11 inclusion and cTNT exon 5 skipping. Here, we identify a cluster of three binding sequences located downstream of IR exon 11 that constitute the MBNL1 response element and a weaker response element in the upstream intron. In addition, we used sequential deletions to define the functional domains of MBNL1 and MBNL3. We demonstrate that the regions required for splicing regulation are separate from the two pairs of zinc-finger RNA-binding domains. MBNL1 and MBNL3 contain core regulatory regions for both activation and repression located within an 80-amino-acid segment located downstream of the N-terminal zinc-finger pair. Deletions of these regions abolished regulation without preventing RNA binding. These domains have common features with the CUG-BP and ETR3-like Factor (CELF) family of splicing regulators. These results have identified protein domains required for splicing repression and activation and provide insight into the mechanism of splicing regulation by MBNL proteins.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBase SequenceBinding SitesCell LineExonsHumansMolecular Sequence DataProtein Structure, TertiaryReceptor, InsulinRegulatory Sequences, Ribonucleic AcidRNA-Binding ProteinsSequence DeletionMBNL1 protein, humanMBNL3 protein, humanReceptor, InsulinRegulatory Sequences, Ribonucleic AcidRNA-Binding Proteins

Identifiers

PMID21109529
PMCPMC3074124
OpenAlexW1992763151

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.