Evidence map›Paper›PMID 21107320›Full record

ArticleNature2010

COT drives resistance to RAF inhibition through MAP kinase pathway reactivation.

Cory M Johannessen, Jesse S Boehm, So Young Kim, Sapana R Thomas, Leslie Wardwell, Laura A Johnson, Caroline M Emery, Nicolas Stransky, Alexandria P Cogdill, Jordi Barretina and 25 more

Registry-linked trialOpen access · greenAbstract read
In one paragraph

Article in Nature, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02583516 (A Randomized Phase II Study of Vemurafenib Plus Cobimetinib Continuous Versus Intermittent, in Previously Untreated BRAFV600- Mutation Positive Patients With Unresectable Locally Advanced or Metastatic Melanoma), which is not on this map. Cited by 791 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
791citing papers in PubMed, 1 pooled it
67.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02583516 phase2completednot on this mapstarted 2015, after this paper: background citation

A Randomized Phase II Study of Vemurafenib Plus Cobimetinib Continuous Versus Intermittent, in Previously Untreated BRAFV600- Mutation Positive Patients With Unresectable Locally Advanced or Metastatic Melanoma

TypeinterventionalSponsorGrupo Español Multidisciplinar de MelanomaRan2015 to 2019Enrolled70ConditionsMelanomaArmsvemurafenib and cobimetinib
3 · Its place in the literature

Who cites it

791 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,444 citations in OpenAlex.

  1. Pooled it
  2. Longitudinal Genomic Analysis to Fine-tune Targeted Therapy: Results of the Phase II LOGIC 2 Trial in Patients with BRAFV600-Mutant Metastatic Melanoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Trial
  3. Trial
  4. Review
  5. Review
  6. Article
  7. Gene fusions in melanocytic lesions: an updated comprehensive review.Journal of pathology and translational medicine · 2026
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. The role of SPRED1 mutation in melanoma.European journal of medical research · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. MEK Inhibition in Glioblastoma: Current Perspectives and Future Directions.International journal of molecular sciences · 2025
    Review
  19. Article
  20. Article

731 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

35 authors at 7 institutions in 2 countries.

Cory M JohannessenBroad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA.
Jesse S Boehm
So Young Kim
Sapana R Thomas
Leslie Wardwell
Laura A Johnson
Caroline M Emery
Nicolas Stransky
Alexandria P Cogdill
Jordi Barretina
Giordano Caponigro
Haley Hieronymus
Ryan R Murray
Kourosh Salehi-Ashtiani
David E Hill
Marc Vidal
Jean J Zhao
Xiaoping Yang
Ozan Alkan
Sungjoon Kim
Jennifer L Harris
Christopher J Wilson
Vic E Myer
Peter M Finan
David E Root
Thomas M Roberts
Todd Golub
Keith T Flaherty
Reinhard Dummer
Barbara L Weber
William R Sellers
Robert Schlegel
Jennifer A Wargo
William C Hahn
Levi A Garraway
Dana-Farber Cancer Institute · USHarvard University · USBroad Institute · USMassachusetts Institute of Technology · USMassachusetts General Hospital · USGenomics Institute of the Novartis Research Foundation · USUniversity of Zurich · CH

Funding

Targeting Raf in Melanoma: Mechanisms for Effect & Resistance & Opportunities forP50CA093683 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HARRINGTON, DAVID P · 2001 to 2012
$25.8M
Functional Annotation of Cancer Genomes: TCGA, Glioblastoma and Ovarian CancerRC2CA148268 · NCI · DANA-FARBER CANCER INST · PI CHIN, LYNDA, HAHN, WILLIAM C. · 2009 to 2012
$6.6M
Defining Melanoma Therapeutic Avenues by Integrative Functional GenomicsDP2OD002750 · OD · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI ALEXANDER · 2007 to 2007
$2.6M
Roles of class 1A PI3K isoforms in mammary epithelium function and breast cancerR01CA134502 · NCI · DANA-FARBER CANCER INST · PI ZHAO, JEAN · 2008 to 2012
$1.7M
Integrated genomic approaches to identify and validate cancer targetsR33CA128625 · NCI · DANA-FARBER CANCER INST · PI HAHN, WILLIAM C. · 2008 to 2010
$1.6M
Integrated Functional Genomic Analyses of MelanomaK08CA115927 · NCI · DANA-FARBER CANCER INSTITUTE · PI GARRAWAY, LEVI A. · 2005 to 2009
$684k
NCI NIH HHS CA134502NCI NIH HHS K08 CA115927NCI NIH HHS P50 CA093683NCI NIH HHS R01 CA134502NCI NIH HHS R33 CA128625NCI NIH HHS RC2 CA148268NIH HHS DP2 OD002750
6 · The paper itself

Abstract

Oncogenic mutations in the serine/threonine kinase B-RAF (also known as BRAF) are found in 50-70% of malignant melanomas. Pre-clinical studies have demonstrated that the B-RAF(V600E) mutation predicts a dependency on the mitogen-activated protein kinase (MAPK) signalling cascade in melanoma-an observation that has been validated by the success of RAF and MEK inhibitors in clinical trials. However, clinical responses to targeted anticancer therapeutics are frequently confounded by de novo or acquired resistance. Identification of resistance mechanisms in a manner that elucidates alternative 'druggable' targets may inform effective long-term treatment strategies. Here we expressed ∼600 kinase and kinase-related open reading frames (ORFs) in parallel to interrogate resistance to a selective RAF kinase inhibitor. We identified MAP3K8 (the gene encoding COT/Tpl2) as a MAPK pathway agonist that drives resistance to RAF inhibition in B-RAF(V600E) cell lines. COT activates ERK primarily through MEK-dependent mechanisms that do not require RAF signalling. Moreover, COT expression is associated with de novo resistance in B-RAF(V600E) cultured cell lines and acquired resistance in melanoma cells and tissue obtained from relapsing patients following treatment with MEK or RAF inhibitors. We further identify combinatorial MAPK pathway inhibition or targeting of COT kinase activity as possible therapeutic strategies for reducing MAPK pathway activation in this setting. Together, these results provide new insights into resistance mechanisms involving the MAPK pathway and articulate an integrative approach through which high-throughput functional screens may inform the development of novel therapeutic strategies.

Indexed as

Drug Resistance, NeoplasmMAP Kinase Signaling SystemAllosteric RegulationCell Line, TumorClinical Trials as TopicEnzyme ActivationGene Expression ProfilingGene Expression Regulation, NeoplasticGene LibraryHumansIndolesMAP Kinase Kinase KinasesMelanomaMitogen-Activated Protein Kinase KinasesMitogen-Activated Protein KinasesOpen Reading FramesBRAF protein, humanIndolesMAP3K8 protein, humanMAP Kinase Kinase KinasesMitogen-Activated Protein Kinase KinasesMitogen-Activated Protein KinasesProtein Kinase InhibitorsProto-Oncogene ProteinsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-rafSulfonamidesVemurafenib

Identifiers

PMID21107320
PMCPMC3058384
OpenAlexW2141674733

What OpenQuestion holds

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Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.