ArticleBMC evolutionary biology2010
Eco-evolutionary dynamics, coding structure and the information threshold.
Article in BMC evolutionary biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed, 14 citations in OpenAlex.
- Genome Streamlining: Effect of Mutation Rate and Population Size on Genome Size Reduction.Genome biology and evolution · 2024Article
- Evolution of evolvability and phenotypic plasticity in virtual cells.BMC evolutionary biology · 2017Article
- Reductive genome evolution at both ends of the bacterial population size spectrum.Nature reviews. Microbiology · 2014Article
- Mutation rates and evolution of multiple coding in RNA-based protocells.Journal of molecular evolution · 2014Article
- Evolution of functional diversification within quasispecies.Genome biology and evolution · 2014Article
- New insights into bacterial adaptation through in vivo and in silico experimental evolution.Nature reviews. Microbiology · 2012Review
- Article
- Virtual genomes in flux: an interplay of neutrality and adaptability explains genome expansion and streamlining.Genome biology and evolution · 2012Article
- The roots of bioinformatics in theoretical biology.PLoS computational biology · 2011Article
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Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe amount of information that can be maintained in an evolutionary system of replicators is limited by genome length, the number of errors during replication (mutation rate) and various external factors that influence the selection pressure. To date, this phenomenon, known as the information threshold, has been studied (both genotypically and phenotypically) in a constant environment and with respect to maintenance (as opposed to accumulation) of information. Here we take a broader perspective on this problem by studying the accumulation of information in an ecosystem, given an evolvable coding structure. Moreover, our setup allows for individual based as well as ecosystem based solutions. That is, all functions can be performed by individual replicators, or complementing functions can be performed by different replicators. In this setup, where both the ecosystem and the individual genomes can evolve their structure, we study how populations cope with high mutation rates and accordingly how the information threshold might be alleviated.
resultsWe observe that the first response to increased mutation rates is a change in coding structure. At moderate mutation rates evolution leads to longer genomes with a higher diversity than at high mutation rates. Thus, counter-intuitively, at higher mutation rates diversity is reduced and the efficacy of the evolutionary process is decreased. Therefore, moderate mutation rates allow for more degrees of freedom in exploring genotype space during the evolutionary trajectory, facilitating the emergence of solutions. When an individual based solution cannot be attained due to high mutation rates, spatial structuring of the ecosystem can accommodate the evolution of ecosystem based solutions.
conclusionsWe conclude that the evolutionary freedom (eg. the number of genotypes that can be reached by evolution) is increasingly restricted by higher mutation rates. In the case of such severe mutation rates that an individual based solution cannot be evolved, the ecosystem can take over and still process the required information forming ecosystem based solutions. We provide a proof of principle for species fulfilling the different roles in an ecosystem when single replicators can no longer cope with all functions simultaneously. This could be a first step in crossing the information threshold.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.