ArticleBMC plant biology2010
Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila.
Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 47 citations in OpenAlex.
- Characterization of the NaPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Assessment of Shoot Priming Efficiency to Counteract Complex Metal Stress in HalotolerantPlants (Basel, Switzerland) · 2023Article
- Impact of Nanomaterials on the Regulation of Gene Expression and Metabolomics of Plants under Salt Stress.Plants (Basel, Switzerland) · 2022Review
- The Halophyte Dehydrin Sequence Landscape.Biomolecules · 2022Article
- KLU/CYP78A5, a Cytochrome P450 Monooxygenase IdentifiedFrontiers in plant science · 2022Article
- HKT sodium and potassium transporters in Arabidopsis thaliana and related halophyte species.Physiologia plantarum · 2021Review
- Article
- Halophytism: What Have We Learnt FromPlant physiology · 2018Review
- Halophytes: Potential Resources for Salt Stress Tolerance Genes and Promoters.Frontiers in plant science · 2017Review
- Article
- Comparative proteomics of Thellungiella halophila leaves from plants subjected to salinity reveals the importance of chloroplastic starch and soluble sugars in halophyte salt tolerance.Molecular & cellular proteomics : MCP · 2013Article
- Growth platform-dependent and -independent phenotypic and metabolic responses of Arabidopsis and its halophytic relative, Eutrema salsugineum, to salt stress.Plant physiology · 2013Article
- Physiological and molecular mechanisms of plant salt tolerance.Photosynthesis research · 2013Review
- The Reference Genome of the Halophytic Plant Eutrema salsugineum.Frontiers in plant science · 2013Article
- Life at the extreme: lessons from the genome.Genome biology · 2012Review
Corrections and comments
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Authors and funding
10 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThellungiella halophila (also known as T. salsuginea) is a model halophyte with a small size, short life cycle, and small genome. Thellungiella genes exhibit a high degree of sequence identity with Arabidopsis genes (90% at the cDNA level). We previously generated a full-length enriched cDNA library of T. halophila from various tissues and from whole plants treated with salinity, chilling, freezing stress, or ABA. We determined the DNA sequences of 20 000 cDNAs at both the 5'- and 3' ends, and identified 9569 distinct genes.
resultsHere, we completely sequenced 1047 Thellungiella full-length cDNAs representing abiotic-stress-related genes, transcription factor genes, and protein phosphatase 2C genes. The predicted coding sequences, 5'-UTRs, and 3'-UTRs were compared with those of orthologous genes from Arabidopsis for length, sequence similarity, and structure. The 5'-UTR sequences of Thellungiella and Arabidopsis orthologs shared a significant level of similarity, although the motifs were rearranged. While examining the stress-related Thellungiella coding sequences, we found a short splicing variant of T. halophila salt overly sensitive 1 (ThSOS1), designated ThSOS1S. ThSOS1S contains the transmembrane domain of ThSOS1 but lacks the C-terminal hydrophilic region. The expression level of ThSOS1S under normal growth conditions was higher than that of ThSOS1. We also compared the expression levels of Na+-transport-system genes between Thellungiella and Arabidopsis by using full-length cDNAs from each species as probes. Several genes that play essential roles in Na+ excretion, compartmentation, and diffusion (SOS1, SOS2, NHX1, and HKT1) were expressed at higher levels in Thellungiella than in Arabidopsis.
conclusionsThe full-length cDNA sequences obtained in this study will be essential for the ongoing annotation of the Thellungiella genome, especially for further improvement of gene prediction. Moreover, they will enable us to find splicing variants such as ThSOS1S (AB562331).
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