Evidence map›Paper›PMID 21098670›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Mechanism of action and inhibition of dehydrosqualene synthase.

Fu-Yang Lin, Chia-I Liu, Yi-Liang Liu, Yonghui Zhang, Ke Wang, Wen-Yih Jeng, Tzu-Ping Ko, Rong Cao, Andrew H-J Wang, Eric Oldfield

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 90 citations in OpenAlex.

  1. Chemical Profiling and Antimicrobial Activity of the Leaf Essential Oil ofInternational journal of molecular sciences · 2026
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  2. Selective bioactive effects ofFrontiers in pharmacology · 2026
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  12. Investigating the effect ofIn silico pharmacology · 2024
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  13. Review
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  18. Antivirulence Strategies for the Treatment ofFrontiers in microbiology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Fu-Yang LinCenter for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Chia-I Liu
Yi-Liang Liu
Yonghui Zhang
Ke Wang
Wen-Yih Jeng
Tzu-Ping Ko
Rong Cao
Andrew H-J Wang
Eric Oldfield
University of Illinois Urbana-Champaign · USAcademia Sinica · TWInstitute of Biological Chemistry, Academia Sinica · TW

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Protein Structure/Function by NMR, Crystallography and Computational ChemistryR01AI074233 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2008 to 2012
$1.8M
NIAID NIH HHS AI-074233NIAID NIH HHS R01 AI074233NIBIB NIH HHS P30 EB009998
6 · The paper itself

Abstract

"Head-to-head" terpene synthases catalyze the first committed steps in sterol and carotenoid biosynthesis: the condensation of two isoprenoid diphosphates to form cyclopropylcarbinyl diphosphates, followed by ring opening. Here, we report the structures of Staphylococcus aureus dehydrosqualene synthase (CrtM) complexed with its reaction intermediate, presqualene diphosphate (PSPP), the dehydrosqualene (DHS) product, as well as a series of inhibitors. The results indicate that, on initial diphosphate loss, the primary carbocation so formed bends down into the interior of the protein to react with C2,3 double bond in the prenyl acceptor to form PSPP, with the lower two-thirds of both PSPP chains occupying essentially the same positions as found in the two farnesyl chains in the substrates. The second-half reaction is then initiated by the PSPP diphosphate returning back to the Mg(2+) cluster for ionization, with the resultant DHS so formed being trapped in a surface pocket. This mechanism is supported by the observation that cationic inhibitors (of interest as antiinfectives) bind with their positive charge located in the same region as the cyclopropyl carbinyl group; that S-thiolo-diphosphates only inhibit when in the allylic site; activity results on 11 mutants show that both DXXXD conserved domains are essential for PSPP ionization; and the observation that head-to-tail isoprenoid synthases as well as terpene cyclases have ionization and alkene-donor sites which spatially overlap those found in CrtM.

Indexed as

Alkyl and Aryl TransferasesAnimalsBacterial ProteinsCatalysisCationsFarnesyl-Diphosphate FarnesyltransferaseHumansMolecular StructurePolyisoprenyl PhosphatesSqualeneAlkyl and Aryl TransferasesBacterial ProteinsCationsCrtM protein, Staphylococcus aureusdehydrosqualeneFarnesyl-Diphosphate FarnesyltransferasePolyisoprenyl Phosphatespresqualene pyrophosphateSqualeneterpene synthase

Identifiers

PMID21098670
PMCPMC3003041
OpenAlexW2128525919

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.