Evidence map›Paper›PMID 21098654›Full record

ArticleRNA (New York, N.Y.)2011

Transcriptome analysis of embryonic and adult sensory axons reveals changes in mRNA repertoire localization.

Laura F Gumy, Giles S H Yeo, Yi-Chun Loraine Tung, Krishna H Zivraj, Dianna Willis, Giovanni Coppola, Brian Y H Lam, Jeffery L Twiss, Christine E Holt, James W Fawcett

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 231 papers.

0numbers the graph read from it
0cells of the map it votes in
231citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

231 citing papers in PubMed, 380 citations in OpenAlex.

  1. Beneficially Stressing the Peripheral Nervous System to Repair.International journal of molecular sciences · 2026
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171 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Laura F GumyCentre for Brain Repair, University of Cambridge, Forvie Site, Cambridge CB2 0PY, United Kingdom.
Giles S H Yeo
Yi-Chun Loraine Tung
Krishna H Zivraj
Dianna Willis
Giovanni Coppola
Brian Y H Lam
Jeffery L Twiss
Christine E Holt
James W Fawcett
University of Cambridge · GBCornell University · USDrexel University · USUniversity of California, Los Angeles · US

Funding

Axonal Transport and Local Translation in Neuropathic PainR00NR010797 · NINR · WINIFRED MASTERSON BURKE MED RES INST · PI WILLIS, DIANNA E. · 2010 to 2012
$733k
Medical Research Council G0501592Medical Research Council G0600717NINR NIH HHS R00 NR010797
6 · The paper itself

Abstract

mRNAs are transported, localized, and translated in axons of sensory neurons. However, little is known about the full repertoire of transcripts present in embryonic and adult sensory axons and how this pool of mRNAs dynamically changes during development. Here, we used a compartmentalized chamber to isolate mRNA from pure embryonic and adult sensory axons devoid of non-neuronal or cell body contamination. Genome-wide microarray analysis reveals that a previously unappreciated number of transcripts are localized in sensory axons and that this repertoire changes during development toward adulthood. Embryonic axons are enriched in transcripts encoding cytoskeletal-related proteins with a role in axonal outgrowth. Surprisingly, adult axons are enriched in mRNAs encoding immune molecules with a role in nociception. Additionally, we show Tubulin-beta3 (Tubb3) mRNA is present only in embryonic axons, with Tubb3 locally synthesized in axons of embryonic, but not adult neurons where it is transported, thus validating our experimental approach. In summary, we provide the first complete catalog of embryonic and adult sensory axonal mRNAs. In addition we show that this pool of axonal mRNAs dynamically changes during development. These data provide an important resource for studies on the role of local protein synthesis in axon regeneration and nociception during neuronal development.

Indexed as

Gene Expression ProfilingAnimalsAxonsBlotting, WesternCells, CulturedEmbryo, MammalianImmunoenzyme TechniquesNerve RegenerationNerve Tissue ProteinsOligonucleotide Array Sequence AnalysisRatsRats, Sprague-DawleyReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSensory Receptor CellsTubulinNerve Tissue ProteinsRNA, MessengerTubb3 protein, ratTubulin

Identifiers

PMID21098654
PMCPMC3004069
OpenAlexW2133948974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.