Evidence map›Paper›PMID 21098259›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Structural identification of cation binding pockets in the plasma membrane proton pump.

Kira Ekberg, Bjørn P Pedersen, Danny M Sørensen, Ann K Nielsen, Bjarke Veierskov, Poul Nissen, Michael G Palmgren, Morten J Buch-Pedersen

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Evolutionary and Functional Analysis of aFrontiers in plant science · 2019
    Article
  6. Article
  7. Inhibition of the Formation of the Spf1p Phosphoenzyme by Ca2.The Journal of biological chemistry · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kira EkbergCentre for Membrane Pumps in Cells and Disease-PUMPKIN, Danish National Research Foundation Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark.
Bjørn P Pedersen
Danny M Sørensen
Ann K Nielsen
Bjarke Veierskov
Poul Nissen
Michael G Palmgren
Morten J Buch-Pedersen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The activity of P-type plasma membrane H(+)-ATPases is modulated by H(+) and cations, with K(+) and Ca(2+) being of physiological relevance. Using X-ray crystallography, we have located the binding site for Rb(+) as a K(+) congener, and for Tb(3+) and Ho(3+) as Ca(2+) congeners. Rb(+) is found coordinated by a conserved aspartate residue in the phosphorylation domain. A single Tb(3+) ion is identified positioned in the nucleotide-binding domain in close vicinity to the bound nucleotide. Ho(3+) ions are coordinated at two distinct sites within the H(+)-ATPase: One site is at the interface of the nucleotide-binding and phosphorylation domains, and the other is in the transmembrane domain toward the extracellular side. The identified binding sites are suggested to represent binding pockets for regulatory cations and a H(+) binding site for protons leaving the pump molecule. This implicates Ho(3+) as a novel chemical tool for identification of proton binding sites.

Indexed as

Protein Structure, TertiaryProtonsBinding SitesCationsCell MembraneCrystallography, X-RayGenetic Complementation TestMetalsMolecular Sequence DataPoint MutationProton PumpsSaccharomyces cerevisiaeCationsMetalsProton PumpsProtons

Identifiers

PMID21098259
PMCPMC3003096

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.