Evidence map›Paper›PMID 21097703›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

CO impedes superfast O2 binding in ba3 cytochrome oxidase from Thermus thermophilus.

Istvan Szundi, Chie Funatogawa, James A Fee, Tewfik Soulimane, Olöf Einarsdóttir

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Coupled transport of electrons and protons in a bacterial cytochromePhysical chemistry chemical physics : PCCP · 2020
    Article
  3. A Water Molecule Residing in the FeInorganic chemistry · 2020
    Article
  4. The Reactions of OBiophysical journal · 2020
    Article
  5. Review
  6. Article
  7. Cytochrome aaBiochemistry · 2018
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Istvan SzundiDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.
Chie Funatogawa
James A Fee
Tewfik Soulimane
Olöf Einarsdóttir
University of California, Santa Cruz · USScripps Research Institute · USUniversity of Limerick · IE

Funding

MECHANISMS OF RESPIRATIONR01GM035342 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI STOUT, CHARLES DAVID · 1985 to 2012
$4.6M
Mechanism of Dioxygen Reduction by Heme-Copper OxidasesR01GM053788 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI EINARSDOTTIR, OLOF · 1997 to 2010
$2.4M
NIGMS NIH HHS GM 35342NIGMS NIH HHS GM53788NIGMS NIH HHS R01 GM035342NIGMS NIH HHS R01 GM053788
6 · The paper itself

Abstract

Kinetic studies of heme-copper terminal oxidases using the CO flow-flash method are potentially compromised by the fate of the photodissociated CO. In this time-resolved optical absorption study, we compared the kinetics of dioxygen reduction by ba(3) cytochrome c oxidase from Thermus thermophilus in the absence and presence of CO using a photolabile O(2)-carrier. A novel double-laser excitation is introduced in which dioxygen is generated by photolyzing the O(2)-carrier with a 355 nm laser pulse and the fully reduced CO-bound ba(3) simultaneously with a second 532-nm laser pulse. A kinetic analysis reveals a sequential mechanism in which O(2) binding to heme a(3) at 90 μM O(2) occurs with lifetimes of 9.3 and 110 μs in the absence and presence of CO, respectively, followed by a faster cleavage of the dioxygen bond (4.8 μs), which generates the P intermediate with the concomitant oxidation of heme b. The second-order rate constant of 1 × 10(9) M(-1) s(-1) for O(2) binding to ba(3) in the absence of CO is 10 times greater than observed in the presence of CO as well as for the bovine heart enzyme. The O(2) bond cleavage in ba(3) of 4.8 μs is also approximately 10 times faster than in the bovine enzyme. These results suggest important structural differences between the accessibility of O(2) to the active site in ba(3) and the bovine enzyme, and they demonstrate that the photodissociated CO impedes access of dioxygen to the heme a(3) site in ba(3), making the CO flow-flash method inapplicable.

Indexed as

AnimalsCarbon MonoxideCattleCytochrome b GroupElectron Transport Complex IVKineticsOxidation-ReductionOxygenProtein BindingSpectrum AnalysisThermus thermophilusCarbon Monoxidecytochrome ba3Cytochrome b GroupElectron Transport Complex IVOxygen

Identifiers

PMID21097703
PMCPMC3000243
OpenAlexW1998612921

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.