Evidence map›Paper›PMID 21097465›Full record

ArticleNucleic acids research2011

Towards BioDBcore: a community-defined information specification for biological databases.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Teresa K Attwood, Alex Bateman, Judith A Blake, Carol J Bult, J Michael Cherry and 29 more

Abstract readEditorial
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. The Elements of Data Sharing.Genomics, proteomics & bioinformatics · 2020
    Article
  2. Article
  3. Article
  4. Article
  5. BGMUT Database of Allelic Variants of Genes Encoding Human Blood Group Antigens.Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie · 2014
    Review
  6. Article
  7. Article
  8. Article
  9. Towards the collaborative curation of the registry underlying Identifiers.org.Database : the journal of biological databases and curation · 2013
    Article
  10. Article
  11. Article
  12. Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference.Database : the journal of biological databases and curation · 2012
    Article
  13. Article
  14. Article
  15. Article
  16. Biocurators and biocuration: surveying the 21st century challenges.Database : the journal of biological databases and curation · 2012
    Article
  17. MSV3d: database of human MisSense Variants mapped to 3D protein structure.Database : the journal of biological databases and curation · 2012
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Pascale Gaudet
Amos Bairoch
Dawn Field
Susanna-Assunta Sansone
Chris Taylor
Teresa K Attwood
Alex Bateman
Judith A Blake
Carol J Bult
J Michael Cherry
Rex L Chisholm
Guy Cochrane
Charles E Cook
Janan T Eppig
Michael Y Galperin
Robert Gentleman
Carole A Goble
Takashi Gojobori
John M Hancock
Douglas G Howe
Tadashi Imanishi
Janet Kelso
David Landsman
Suzanna E Lewis
Ilene Karsch Mizrachi
Sandra Orchard
B F Francis Ouellette
Shoba Ranganathan
Lorna Richardson
Philippe Rocca-Serra
Paul N Schofield
Damian Smedley
Christopher Southan
Tin Wee Tan
Tatiana Tatusova
Patricia L Whetzel
Owen White
Chisato Yamasaki
BioDBCore Working Group

Funding

Mouse Genome DatabaseU41HG000330 · NHGRI · JACKSON LABORATORY · PI BLAKE, JUDITH A, BULT, CAROL J · 2011 to 2020
$45.5M
Development of DictyBase, an online informatics resourceR01GM064426 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2002 to 2019
$8.3M
The Dictyostelium Stock CenterR01GM087371 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2009 to 2019
$2.4M
Biotechnology and Biological Sciences Research Council BB/E025080/1Biotechnology and Biological Sciences Research Council BB/F01046X/1Biotechnology and Biological Sciences Research Council BB/I000771/1Intramural NIH HHS Z99 LM999999Medical Research Council MC_U127527203Medical Research Council MC_U142684171NHGRI NIH HHS U41 HG000330NIGMS NIH HHS R01 GM064426NIGMS NIH HHS R01 GM087371
6 · The paper itself

Abstract

The present article proposes the adoption of a community-defined, uniform, generic description of the core attributes of biological databases, BioDBCore. The goals of these attributes are to provide a general overview of the database landscape, to encourage consistency and interoperability between resources and to promote the use of semantic and syntactic standards. BioDBCore will make it easier for users to evaluate the scope and relevance of available resources. This new resource will increase the collective impact of the information present in biological databases.

Indexed as

Databases, FactualInformation Dissemination

Identifiers

PMID21097465
PMCPMC3013734

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.