Evidence map›Paper›PMID 21091505›Full record

ArticleMolecular microbiology2010

Carbon flux rerouting during Mycobacterium tuberculosis growth arrest.

Lanbo Shi, Charles D Sohaskey, Carmen Pheiffer, Carmen Pfeiffer, Pratik Datta, Michael Parks, Johnjoe McFadden, Robert J North, Maria L Gennaro

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 134 citations in OpenAlex.

  1. Adaptive immunity shapes baseline physiology ofbioRxiv : the preprint server for biology · 2026
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  7. TargetingMicrobiology (Reading, England) · 2024
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  9. MadR mediates acyl CoA-dependent regulation of mycolic acid desaturation in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  10. Review
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  13. Phosphofructokinases A and B fromInternational journal of molecular sciences · 2021
    Article
  14. Understanding Metabolic Remodeling inFrontiers in microbiology · 2021
    Article
  15. Review
  16. Review
  17. Article
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  19. Article
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Lanbo ShiPublic Health Research Institute, New Jersey Medical School, Newark, NJ 07103, USA.
Charles D Sohaskey
Carmen Pheiffer
Carmen Pfeiffer
Pratik Datta
Michael Parks
Johnjoe McFadden
Robert J North
Maria L Gennaro
Rutgers New Jersey Medical SchoolLong Beach Medical Center · USTrudeau Institute · USUniversity of Surrey · GB

Funding

VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1989 to 2010
$19.4M
Mapping and modeling host-pathogen interactions in TB latency and reactivationR01HL106788 · NHLBI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI BALAZSI, GABOR, GENNARO, MARIA LAURA · 2010 to 2013
$3.1M
Anti-tuberculosis vaccination: The role of macrophagesR01AI069161 · NIAID · TRUDEAU INSTITUTE, INC. · PI NORTH, ROBERT JOHN · 2006 to 2008
$1.2M
Dissection of Mycobacterium tuberculosis metabolic and regulatory pathways to perR21AI083855 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI SHI, LANBO · 2009 to 2010
$429k
Triacylglycerol metabolism and Mtb virulenceR21AI090328 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI SHI, LANBO · 2011 to 2012
$429k
Antibody profiles characteristic of tuberculosis stateR21AI063246 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI GENNARO, MARIA LAURA · 2005 to 2006
$364k
Biotechnology and Biological Sciences Research CouncilNHLBI NIH HHS R01 HL106788NIAID NIH HHS P30 AI027742NIAID NIH HHS R01 AI069161NIAID NIH HHS R21 AI063246NIAID NIH HHS R21 AI083855NIAID NIH HHS R21 AI090328
6 · The paper itself

Abstract

A hallmark of the Mycobacterium tuberculosis life cycle is the pathogen's ability to switch between replicative and non-replicative states in response to host immunity. Transcriptional profiling by qPCR of ∼ 50 M. tuberculosis genes involved in central and lipid metabolism revealed a re-routing of carbon flow associated with bacterial growth arrest during mouse lung infection. Carbon rerouting was marked by a switch from metabolic pathways generating energy and biosynthetic precursors in growing bacilli to pathways for storage compound synthesis during growth arrest. Results of flux balance analysis using an in silico metabolic network were consistent with the transcript abundance data obtained in vivo. Similar transcriptional changes were seen in vitro when M. tuberculosis cultures were treated with bacteriostatic stressors under different nutritional conditions. Thus, altered expression of key metabolic genes reflects growth rate changes rather than changes in substrate availability. A model describing carbon flux rerouting was formulated that (i) provides a coherent interpretation of the adaptation of M. tuberculosis metabolism to immunity-induced stress and (ii) identifies features common to mycobacterial dormancy and stress responses of other organisms.

Indexed as

AnimalsBacterial ProteinsCarbonGene Expression Regulation, BacterialHumansLungMetabolic Networks and PathwaysMiceMice, Inbred C57BLMycobacterium tuberculosisTuberculosisBacterial ProteinsCarbon

Identifiers

PMID21091505
PMCPMC3072047
OpenAlexW1559223366

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.