Evidence map›Paper›PMID 21091445›Full record

ArticleBioTechniques2010

Four-color single-molecule fluorescence with noncovalent dye labeling to monitor dynamic multimolecular complexes.

Vanessa DeRocco, Trevor Anderson, Jacob Piehler, Dorothy A Erie, Keith Weninger

Abstract read
In one paragraph

Article in BioTechniques, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Molecular and Spectroscopic Characterization of Green and Red Cyanine Fluorophores from the Alexa Fluor and AF Series*.Chemphyschem : a European journal of chemical physics and physical chemistry · 2021
    Article
  3. Review
  4. Article
  5. Article
  6. Three tRNAs on the ribosome slow translation elongation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Review
  14. The bright future of single-molecule fluorescence imaging.Current opinion in chemical biology · 2014
    Review
  15. Single-molecule FRET experiments with a red-enhanced custom technology SPAD.Proceedings of SPIE--the International Society for Optical Engineering · 2013
    Article
  16. Single-molecule nanometry for biological physics.Reports on progress in physics. Physical Society (Great Britain) · 2013
    Review
  17. Article
  18. Article
  19. Article
  20. Dynamics of lesion processing by bacterial nucleotide excision repair proteins.Progress in molecular biology and translational science · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vanessa DeRoccoDepartment of Chemistry, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. derie@unc.edu
Trevor Anderson
Jacob Piehler
Dorothy A Erie
Keith Weninger

Funding

Structure Function Studies of DNA Mismatch RepairR01GM079480 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ERIE, DOROTHY A · 2007 to 2017
$2.7M
Mechanistic studies of DNA repair and damage responseR01GM080294 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ERIE, DOROTHY A · 2009 to 2010
$565k
Single Molecule Studies of the Role of yMsh2-Msh6 in DNA Mismatch RepairF31GM087096 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DEROCCO, VANESSA CAROLYN · 2009 to 2011
$89k
NIGMS NIH HHS F31 GM087096NIGMS NIH HHS F31GM087096NIGMS NIH HHS GM080294NIGMS NIH HHS R01 GM079480NIGMS NIH HHS R01 GM080294
6 · The paper itself

Abstract

To enable studies of conformational changes within multimolecular complexes, we present a simultaneous, four-color single molecule fluorescence methodology implemented with total internal reflection illumination and camera-based, wide-field detection. We further demonstrate labeling histidine-tagged proteins noncovalently with Tris-nitrilotriacetic acid (Tris-NTA)-conjugated dyes to achieve single molecule detection. We combine these methods to colocalize the mismatch repair protein MutSα on DNA while monitoring MutSα-induced DNA bending using Förster resonance energy transfer (FRET) and to monitor assembly of membrane-tethered SNARE protein complexes.

Indexed as

Coloring AgentsDNADNA Mismatch RepairEnergy TransferFluorescence Resonance Energy TransferHistidineMacromolecular SubstancesMutS DNA Mismatch-Binding ProteinNitrilotriacetic AcidNucleic Acid ConformationProtein ConformationSNARE ProteinsTromethamineColoring AgentsDNAHistidineMacromolecular SubstancesMutS DNA Mismatch-Binding ProteinNitrilotriacetic AcidSNARE ProteinsTromethamine

Identifiers

PMID21091445
PMCPMC2996100

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.