Evidence map›Paper›PMID 21087999›Full record

ArticleNucleic acids research2011

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.

Pascale Gaudet, Petra Fey, Siddhartha Basu, Yulia A Bushmanova, Robert Dodson, Kerry A Sheppard, Eric M Just, Warren A Kibbe, Rex L Chisholm

Abstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Frontiers in cell and developmental biology · 2021
    Review
  5. Article
  6. Article
  7. Frontiers in cellular and infection microbiology · 2018
    Review
  8. Primer on the Gene Ontology.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pascale GaudetdictyBase, Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, 420 E Superior St, Chicago, IL 60611, USA.
Petra Fey
Siddhartha Basu
Yulia A Bushmanova
Robert Dodson
Kerry A Sheppard
Eric M Just
Warren A Kibbe
Rex L Chisholm

Funding

MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
Development of DictyBase, an online informatics resourceR01GM064426 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2002 to 2019
$8.3M
The Dictyostelium Stock CenterR01GM087371 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2009 to 2019
$2.4M
NCRR NIH HHS UL1 RR025741NHGRI NIH HHS HG0022NIGMS NIH HHS GM087371NIGMS NIH HHS GM64426NIGMS NIH HHS R01 GM064426NIGMS NIH HHS R01 GM087371
6 · The paper itself

Abstract

dictyBase (http://www.dictybase.org), the model organism database for Dictyostelium, aims to provide the broad biomedical research community with well integrated, high quality data and tools for Dictyostelium discoideum and related species. dictyBase houses the complete genome sequence, ESTs, and the entire body of literature relevant to Dictyostelium. This information is curated to provide accurate gene models and functional annotations, with the goal of fully annotating the genome to provide a 'reference genome' in the Amoebozoa clade. We highlight several new features in the present update: (i) new annotations; (ii) improved interface with web 2.0 functionality; (iii) the initial steps towards a genome portal for the Amoebozoa; (iv) ortholog display; and (v) the complete integration of the Dicty Stock Center with dictyBase.

Indexed as

Databases, GeneticAmoebozoaDictyosteliumGenome, ProtozoanInternetMolecular Sequence AnnotationProtozoan ProteinsSystems IntegrationProtozoan Proteins

Identifiers

PMID21087999
PMCPMC3013695

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.