Evidence map›Paper›PMID 21087945›Full record

ArticleMolecular biology and evolution2011

Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki.

Arnau Sebé-Pedrós, Alex de Mendoza, B Franz Lang, Bernard M Degnan, Iñaki Ruiz-Trillo

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 196 citations in OpenAlex.

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  20. Evolutionary reversion in tumorigenesis.Frontiers in oncology · 2023
    Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Arnau Sebé-Pedrós *Departament de Genètica & Institut de Recerca en Biodiversitat (Irbio), Universitat de Barcelona, Barcelona, Spain.
Alex de Mendoza *Departament de Genètica & Institut de Recerca en Biodiversitat (Irbio), Universitat de Barcelona, Barcelona, Spain.
B Franz LangDepartment of Biochemistry, Université de Montréal, H3C 3J7 Montréal, Canada.
Bernard M DegnanSchool of Biological Sciences, The University of Queensland, Brisbane Queensland 4072, Australia.
Iñaki Ruiz-TrilloDepartament de Genètica & Institut de Recerca en Biodiversitat (Irbio), Universitat de Barcelona, Barcelona, Spain.
Universitat de Barcelona · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversité de Montréal · CAUniversity of Queensland · AU

Funding

European Research Council 206883
6 · The paper itself

Abstract

How animals (metazoans) originated from their single-celled ancestors remains a major question in biology. As transcriptional regulation is crucial to animal development, deciphering the early evolution of associated transcription factors (TFs) is critical to understanding metazoan origins. In this study, we uncovered the repertoire of 17 metazoan TFs in the amoeboid holozoan Capsaspora owczarzaki, a representative of a unicellular lineage that is closely related to choanoflagellates and metazoans. Phylogenetic and comparative genomic analyses with the broadest possible taxonomic sampling allowed us to formulate new hypotheses regarding the origin and evolution of developmental metazoan TFs. We show that the complexity of the TF repertoire in C. owczarzaki is strikingly high, pushing back further the origin of some TFs formerly thought to be metazoan specific, such as T-box or Runx. Nonetheless, TF families whose beginnings antedate the origin of the animal kingdom, such as homeodomain or basic helix-loop-helix, underwent significant expansion and diversification along metazoan and eumetazoan stems.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsChoanoflagellataDNA-Binding ProteinsGenomicsMolecular Sequence DataPhylogenyTranscription FactorsDNA-Binding ProteinsTranscription Factors

Identifiers

PMID21087945
PMCPMC4342549
OpenAlexW2108650715

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.