Evidence map›Paper›PMID 21086178›Full record

ArticleMolecular biology reports2011

Transcript profiling of antioxidant genes during biotic and abiotic stresses in Panax ginseng C. A. Meyer.

Gayathri Sathiyaraj, Ok Ran Lee, Shonana Parvin, Atlanzul Khorolragchaa, Yu-Jin Kim, Deok Chun Yang

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptome Profiling ofPlants (Basel, Switzerland) · 2023
    Article
  4. CRISPR/Cas9-MediatedInternational journal of molecular sciences · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. Transcription FactorInternational journal of molecular sciences · 2019
    Article
  9. Article
  10. A Novel WRKY Transcription Factor,Frontiers in plant science · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Gayathri SathiyarajKorean Ginseng Center for Most Valuable Products and Ginseng Genetic Resource Bank, Kyung Hee University, Suwon, 449-701, South Korea.
Ok Ran Lee
Shonana Parvin
Atlanzul Khorolragchaa
Yu-Jin Kim
Deok Chun Yang
Kyung Hee University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The regulation of reactive oxygen scavengers against biotic and abiotic conditions were investigated in the seedling of Panax ginseng C. A. Meyer. From the EST library we selected the antioxidant marker genes such as superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), glutathione peroxidase (GPX), and glutathione synthase (GS). The abiotic chilling, heat, osmotic, oxidative, and wounding stresses and biotic stresses with fungal pathogens were tested against 3-week-grown seedlings. The expression patterns of the genes were analyzed by means of real-time quantitative RT-PCR. The transcriptome result under abiotic stresses showed differential expression and elevated up-regulation of PgSOD, PgGPX, PgGS, and PgAPX, thus it may prove the generation of ROS in ginseng. Whereas, in biotic stress the up-regulation of transcript level merely based on the incompatible interactions. But PgAPX and PgCAT showed no significant change or slight down-regulation of transcript level during pathogen interaction. Thus it may suggest that in ginseng, plant-pathogen interaction triggers defense-related gene transcription via salicylic acid mediated signaling mechanism, and also possess crosstalk signaling networks between abiotic and biotic stress responses.

Indexed as

Ascorbate PeroxidasesCatalaseDNA PrimersFree Radical ScavengersGene Expression ProfilingGene Expression Regulation, PlantGlutathione PeroxidaseGlutathione SynthasePanaxPeroxidasesReverse Transcriptase Polymerase Chain ReactionSeedlingsStress, PhysiologicalSuperoxide DismutaseAscorbate PeroxidasesCatalaseDNA PrimersFree Radical ScavengersGlutathione PeroxidaseGlutathione SynthasePeroxidasesSuperoxide Dismutase

Identifiers

PMID21086178
OpenAlexW2046692524

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.