Evidence map›Paper›PMID 21084637›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Sumoylation activates the transcriptional activity of Pax-6, an important transcription factor for eye and brain development.

Qin Yan, Lili Gong, Mi Deng, Lan Zhang, Shuming Sun, Jiao Liu, Haili Ma, Dan Yuan, Pei-Chao Chen, Xiaohui Hu and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Article
  6. Article
  7. HSP90β prevents aging-related cataract formation through regulation of the charged multivesicular body protein (CHMP4B) and p53.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Regulation of SUMOylation on RNA metabolism in cancers.Frontiers in molecular biosciences · 2023
    Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Review
  14. Editorial: Apoptosis and Senescence in Vertebrate Development.Frontiers in cell and developmental biology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Qin YanDepartment of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE 68198, USA.
Lili Gong
Mi Deng
Lan Zhang
Shuming Sun
Jiao Liu
Haili Ma
Dan Yuan
Pei-Chao Chen
Xiaohui Hu
Jinping Liu
Jichao Qin
Ling Xiao
Xiao-Qin Huang
Jian Zhang
David Wan-Cheng Li
Hunan Normal University · CNCalifornia University of Pennsylvania · USHuazhong University of Science and Technology · CNHunan University · CNUniversity of Nebraska Medical Center · US

Funding

Regulation of Apoptotic Signaling Pathways by Alpha-Crystallins in the Ocular LenR01EY018380 · NEI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LI, DAVID W · 2009 to 2010
$1.0M
Antiapoptotic Mechanism of Protein Phosphatase-1 in LensR01EY015765 · NEI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LI, DAVID W · 2005 to 2007
$873k
NEI NIH HHS 1R01 EY015765NEI NIH HHS 1R01 EY018380NEI NIH HHS R01 EY015765NEI NIH HHS R01 EY018380
6 · The paper itself

Abstract

Pax-6 is an evolutionarily conserved transcription factor regulating brain and eye development. Four Pax-6 isoforms have been reported previously. Although the longer Pax-6 isoforms (p46 and p48) bear two DNA-binding domains, the paired domain (PD) and the homeodomain (HD), the shorter Pax-6 isoform p32 contains only the HD for DNA binding. Although a third domain, the proline-, serine- and threonine-enriched activation (PST) domain, in the C termini of all Pax-6 isoforms mediates their transcriptional modulation via phosphorylation, how p32 Pax-6 could regulate target genes remains to be elucidated. In the present study, we show that sumoylation at K91 is required for p32 Pax-6 to bind to a HD-specific site and regulate expression of target genes. First, in vitro-synthesized p32 Pax-6 alone cannot bind the P3 sequence, which contains the HD recognition site, unless it is preincubated with nuclear extracts precleared by anti-Pax-6 but not by anti-small ubiquitin-related modifier 1 (anti-SUMO1) antibody. Second, in vitro-synthesized p32 Pax-6 can be sumoylated by SUMO1, and the sumoylated p32 Pax-6 then can bind to the P3 sequence. Third, Pax-6 and SUMO1 are colocalized in the embryonic optic and lens vesicles and can be coimmunoprecipitated. Finally, SUMO1-conjugated p32 Pax-6 exists in both the nucleus and cytoplasm, and sumoylation significantly enhances the DNA-binding ability of p32 Pax-6 and positively regulates gene expression. Together, our results demonstrate that sumoylation activates p32 Pax-6 in both DNA-binding and transcriptional activities. In addition, our studies demonstrate that p32 and p46 Pax-6 possess differential DNA-binding and regulatory activities.

Indexed as

Transcriptional ActivationAnimalsBinding SitesBrainDNAEyeEye ProteinsGene Expression RegulationHomeodomain ProteinsMicePaired Box Transcription FactorsPAX6 Transcription FactorProtein BindingProtein IsoformsRepressor ProteinsSUMO-1 ProteinDNAEye ProteinsHomeodomain ProteinsPaired Box Transcription FactorsPax6 protein, mousePAX6 Transcription FactorProtein IsoformsRepressor ProteinsSUMO-1 ProteinTranscription Factors

Identifiers

PMID21084637
PMCPMC3000302
OpenAlexW1998257541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.