Evidence map›Paper›PMID 21077670›Full record

ArticleBiochemistry2010

Selective incorporation of nitrile-based infrared probes into proteins via cysteine alkylation.

Hyunil Jo, Robert M Culik, Ivan V Korendovych, William F Degrado, Feng Gai

Abstract readComparative Study
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Copper-catalyzed asymmetric C(spNature communications · 2023
    Article
  3. Site-Specific Interrogation of Protein Structure and Stability.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  4. Article
  5. Visible-Light-Mediated Selective Arylation of Cysteine in Batch and Flow.Angewandte Chemie (International ed. in English) · 2017
    Article
  6. Simple method to introduce an ester infrared probe into proteins.Protein science : a publication of the Protein Society · 2017
    Article
  7. Minimalist IR and fluorescence probes of protein function.Current opinion in chemical biology · 2016
    Review
  8. Article
  9. Site-specific infrared probes of proteins.Annual review of physical chemistry · 2015
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A direct comparison of azide and nitrile vibrational probes.Physical chemistry chemical physics : PCCP · 2011
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hyunil JoDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia,Pennsylvania 19104, United States.
Robert M Culik
Ivan V Korendovych
William F Degrado
Feng Gai

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Spectroscopic Study of Protein Folding DynamicsR01GM065978 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI GAI, FENG · 2002 to 2014
$3.9M
NIGMS NIH HHS GM008275NIGMS NIH HHS GM-065978NIGMS NIH HHS R01 GM065978NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

The nitrile stretching vibration is increasingly used as a sensitive infrared probe of local protein environments. However, site-specific incorporation of a nitrile moiety into proteins is difficult. Here we show that various aromatic nitriles can be easily incorporated into peptides and proteins via either thiol alkylation or arylation reaction.

Indexed as

AlkylationCalmodulinCysteineFluorescent DyesHumansNitrilesProteinsSpectrophotometry, InfraredVibrationCALML3 protein, humanCalmodulinCysteineFluorescent DyesNitrilesProteins

Identifiers

PMID21077670
PMCPMC2999665

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.