ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Patterns of polymorphism and linkage disequilibrium in cultivated barley.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed.
- Whole-genome resequencing of the wild barley diversity collection: a resource for identifying and exploiting genetic variation for cultivated barley improvement.G3 (Bethesda, Md.) · 2026Article
- Sodium azide mutagenesis induces a unique pattern of mutations.PLoS genetics · 2025Article
- Genetic characterization of root architectural traits in barley (Frontiers in plant science · 2023Article
- The Breeding of Winter-Hardy Malting Barley.Plants (Basel, Switzerland) · 2021Review
- Genome-Wide SNP Markers for Genotypic and Phenotypic Differentiation of Melon (International journal of molecular sciences · 2021Article
- The influence of breeding history, origin and growth type on population structure of barley as revealed by SSR markers.Scientific reports · 2020Article
- Deciphering the genetic basis for vitamin E accumulation in leaves and grains of different barley accessions.Scientific reports · 2019Article
- Re-evaluation of the role of Indian germplasm as center of melon diversification based on genotyping-by-sequencing analysis.BMC genomics · 2019Article
- Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense.Journal of experimental botany · 2017Article
- Evaluation of LD decay and various LD-decay estimators in simulated and SNP-array data of tetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Comparison of SNP and CAPS markers application in genetic research in wheat and barley.BMC plant biology · 2016Review
- Geographical distribution of genetic diversity in Secale landrace and wild accessions.BMC plant biology · 2016Article
- Barley landraces are characterized by geographically heterogeneous genomic origins.Genome biology · 2015Article
- Association mapping of salt tolerance in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.).BMC genomics · 2013Article
- SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Genomics-based high-resolution mapping of the BaMMV/BaYMV resistance gene rym11 in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals.Functional & integrative genomics · 2013Review
- Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley.Nature genetics · 2012Article
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Corrections and comments
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Authors and funding
8 authors.
Funding
Abstract
We carried out a genome-wide analysis of polymorphism (4,596 SNP loci across 190 elite cultivated accessions) chosen to represent the available genetic variation in current elite North West European and North American barley germplasm. Population sub-structure, patterns of diversity and linkage disequilibrium varied considerably across the seven barley chromosomes. Gene-rich and rarely recombining haplotype blocks that may represent up to 60% of the physical length of barley chromosomes extended across the 'genetic centromeres'. By positioning 2,132 bi-parentally mapped SNP markers with minimum allele frequencies higher than 0.10 by association mapping, 87.3% were located to within 5 cM of their original genetic map position. We show that at this current marker density genetically diverse populations of relatively small size are sufficient to fine map simple traits, providing they are not strongly stratified within the sample, fall outside the genetic centromeres and population sub-structure is effectively controlled in the analysis. Our results have important implications for association mapping, positional cloning, physical mapping and practical plant breeding in barley and other major world cereals including wheat and rye that exhibit comparable genome and genetic features.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.