ArticleApplied and environmental microbiology2011
Respiration response imaging for real-time detection of microbial function at the single-cell level.
Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- MATRIX: rapid quantification of total and active microbial cells with single-cell phenotypes for environmental microbiomes.mSystems · 2026Article
- SIESTA Project: Svalbard summer 2025 expedition report.Open research Europe · 2026Article
- Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment.The ISME journal · 2025Article
- Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Metabolic and transcriptional activities underlie stationary-phaseMicrobiology spectrum · 2024Article
- Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume.Frontiers in microbiology · 2021Article
- The Application of Imaging Flow Cytometry for Characterisation and Quantification of Bacterial Phenotypes.Frontiers in cellular and infection microbiology · 2021Article
- Capturing the genetic makeup of the active microbiome in situ.The ISME journal · 2017Review
- Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Article
- In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry.Environmental microbiology · 2014Article
- Toward understanding, managing, and protecting microbial ecosystems.Frontiers in microbiology · 2011Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The ability to detect specific functions of uncultured microbial cells in complex natural communities remains one of the most difficult tasks of environmental microbiology. Here we present respiration response imaging (RRI) as a novel fluorescence microscopy-based approach for the identification of microbial function, such as the ability to use C(1) substrates, at a single-cell level. We demonstrate that RRI could be used for the investigation of heterogeneity of a single microbial population or for functional profiling of microbial cells from complex environmental communities, such as freshwater lake sediment.
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Registered trials
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