Evidence map›Paper›PMID 21075882›Full record

ArticleApplied and environmental microbiology2011

Isolation of oligotrophic denitrifiers carrying previously uncharacterized functional gene sequences.

Satoshi Ishii, Naoaki Ashida, Shigeto Otsuka, Keishi Senoo

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Response of the Anaerobic Methanotrophic ArchaeonFrontiers in microbiology · 2022
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Potentially Mobile Denitrification Genes Identified inApplied and environmental microbiology · 2019
    Article
  8. Article
  9. Presence of Cu-Type (NirK) and cdMicrobes and environments · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Satoshi IshiiDepartment of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan. anaerobe@mail.ecc.u-tokyo.ac.jp
Naoaki Ashida
Shigeto Otsuka
Keishi Senoo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligotrophic denitrifying bacteria, including those belonging to the genera Herbaspirillum, Azospirillum, and Bradyrhizobium, were obtained using a single-cell isolation technique. The taxonomic composition of the denitrifier population was similar to those assessed by previous culture-independent studies. The sequencing of nitrite reductase and N(2)O reductase genes of these strains revealed previously unknown links between 16S rRNA and the denitrification-functional gene phylogenies. In particular, we identified Bradyrhizobium strains that harbor nirS sequences previously detected only in culture-independent studies.

Indexed as

DenitrificationGenes, BacterialAzospirillumBradyrhizobiumCluster AnalysisDNA, BacterialHerbaspirillumMetabolic Networks and PathwaysMolecular Sequence DataNitrite ReductasesOxidoreductasesPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNADNA, Bacterialnitric-oxide reductaseNitrite ReductasesOxidoreductasesRNA, Ribosomal, 16S

Identifiers

PMID21075882
PMCPMC3019733

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.