Evidence map›Paper›PMID 21075137›Full record

ArticleDevelopmental and comparative immunology2011

Phylogenetic and developmental study of CD4, CD8 α and β T cell co-receptor homologs in two amphibian species, Xenopus tropicalis and Xenopus laevis.

Asiya Seema Chida, Ana Goyos, Jacques Robert

Open access · greenAbstract read
In one paragraph

Article in Developmental and comparative immunology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. The amphibian immune system.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  2. Article
  3. Review
  4. Coreceptors and TCR Signaling - the Strong and the Weak of It.Frontiers in cell and developmental biology · 2020
    Review
  5. Article
  6. Article
  7. Distinct MHC class I-like interacting invariant T cell lineage at the forefront of mycobacterial immunity uncovered inProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  8. Frog's DCs have it all in one.European journal of immunology · 2018
    Article
  9. Research proceedings on amphibian model organisms.Dong wu xue yan jiu = Zoological research · 2016
    Review
  10. Article
  11. Article
  12. Microbiota and mucosal immunity in amphibians.Frontiers in immunology · 2015
    Review
  13. Evolution of nonclassical MHC-dependent invariant T cells.Cellular and molecular life sciences : CMLS · 2014
    Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Asiya Seema ChidaDepartment of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY 14642, USA.
Ana Goyos
Jacques Robert
University of Rochester Medical Center · US

Funding

A Xenopus Laevis Research Resource for ImmunologyR24AI059830 · NIAID · UNIVERSITY OF ROCHESTER · PI JACQUES Robert · 2004 to 2026
$7.7M
Involvement of Nonclassical MHC in Early T Cell Ontogeny in XenopusR03HD061671 · NICHD · UNIVERSITY OF ROCHESTER · PI ROBERT, JACQUES · 2009 to 2010
$154k
NIAID NIH HHS R24 AI059830NIAID NIH HHS R24-AI-059830NICHD NIH HHS 1R03-HD061671-01NICHD NIH HHS R03 HD061671
6 · The paper itself

Abstract

CD4 and CD8 co-receptors play critical roles in T cell development and activation by interacting both with T cell receptors and MHC molecules. Although homologs of these genes have been identified in many jawed vertebrates, there are still unresolved gaps concerning their evolution and specialization in MHC interaction and T cell function. Using experimental and computational procedures we identified CD4, CD8α and CD8β gene homologs both in Xenopus tropicalis, whose full genome has been sequenced, and its sister species Xenopus laevis. Multiple alignments of deduced amino acid sequences reveal a poor conservation of the residues involved in binding of CD4 to MHC class II, and CD8α to class I in non-mammalian species, presumably related to the co-evolutionary pressure of MHC I and II genes. Phylogenetic study suggests that Xenopodinae co-receptor genes are more closely related to their homologs in other tetrapods than those of bony fish. Furthermore, the developmental and cell-specific expression patterns of these genes in X. laevis are very similar to that of mammals. X. laevis CD4 is mainly expressed by peripheral non-CD8 T cells and detected in the thymus as early as four days post-fertilization (dpf) at the onset of thymic organogenesis. CD8β expression is specific to adult surface CD8(+) T cells and thymocytes, and is first detected in the thymus at 5 dpf in parallel with productive TCRγ transrcipts, whereas productive TCRβ and α rearrangements are not detected before 7-9 dpf.

Indexed as

PhylogenyAmino Acid SequenceAnimalsBase SequenceBlotting, NorthernCD4 AntigensConserved SequenceGene ExpressionGene Expression ProfilingMolecular Sequence DataProtein Structure, QuaternaryReceptors, Antigen, T-CellReverse Transcriptase Polymerase Chain ReactionSequence AlignmentT-LymphocytesXenopusCD4 AntigensCD8 receptorReceptors, Antigen, T-CellXenopus Proteins

Identifiers

PMID21075137
PMCPMC3073561
OpenAlexW2075673612

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.