Evidence map›Paper›PMID 21070969›Full record

ArticleMolecular cell2010

WD40 repeat propellers define a ubiquitin-binding domain that regulates turnover of F box proteins.

Natasha Pashkova, Lokesh Gakhar, Stanley C Winistorfer, Liping Yu, S Ramaswamy, Robert C Piper

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
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  6. PLAA/UFD-3 regulates P-bodies through its intrinsic disordered domain.Proceedings of the National Academy of Sciences of the United States of America · 2025
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Natasha PashkovaDepartment of Molecular Physiology and Biophysics, University of Iowa, Iowa City, IA 52242, USA.
Lokesh Gakhar
Stanley C Winistorfer
Liping Yu
S Ramaswamy
Robert C Piper
University of Iowa · US

Funding

Ubiquitin-Dependent Sorting in Endosomes and the TGNR01GM058202 · NIGMS · UNIVERSITY OF IOWA · PI PIPER, ROBERT C · 1998 to 2025
$8.9M
Quantitative mapping of ubiquitin ligase substratesR01GM094830 · NIGMS · UNIVERSITY OF IOWA · PI PIPER, ROBERT C, WRIGHT, MICHAEL E · 2010 to 2013
$1.2M
Structure and Function of a novel and pervasive Ubiqitin-binding moduleR21NS064579 · NINDS · UNIVERSITY OF IOWA · PI PIPER, ROBERT C · 2008 to 2009
$359k
NIGMS NIH HHS R01 GM058202NIGMS NIH HHS R01 GM094830NIGMS NIH HHS R01 GM58202NINDS NIH HHS R21 NS064579
6 · The paper itself

Abstract

WD40-repeat β-propellers are found in a wide range of proteins involved in distinct biological activities. We define a large subset of WD40 β-propellers as a class of ubiquitin-binding domains. Using the β-propeller from Doa1/Ufd3 as a paradigm, we find the conserved top surface of the Doa1 β-propeller binds the hydrophobic patch of ubiquitin centered on residues I44, L8, and V70. Mutations that disrupt ubiquitin binding abrogate Doa1 function, demonstrating the importance of this interaction. We further demonstrate that WD40 β-propellers from a functionally diverse set of proteins bind ubiquitin in a similar fashion. This set includes members of the F box family of SCF ubiquitin E3 ligase adaptors. Using mutants defective in binding, we find that ubiquitin interaction by the F box protein Cdc4 promotes its autoubiquitination and turnover. Collectively, our results reveal a molecular mechanism that may account for how ubiquitin controls a broad spectrum of cellular activities.

Indexed as

Repetitive Sequences, Amino AcidAdaptor Proteins, Signal TransducingBinding SitesCell Cycle ProteinsCrystallography, X-RayF-Box ProteinsF-Box-WD Repeat-Containing Protein 7HumansModels, MolecularProtein Processing, Post-TranslationalProtein Structure, SecondaryProtein Structure, TertiaryReproducibility of ResultsSaccharomyces cerevisiae ProteinsStructure-Activity RelationshipSurface PropertiesAdaptor Proteins, Signal TransducingCell Cycle ProteinsDOA1 protein, S cerevisiaeF-Box ProteinsF-Box-WD Repeat-Containing Protein 7FBXW7 protein, humanSaccharomyces cerevisiae ProteinsUbiquitinUbiquitin-Protein Ligases

Identifiers

PMID21070969
PMCPMC3266742
OpenAlexW1984309491

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.