Evidence map›Paper›PMID 21070850›Full record

ArticleFree radical biology & medicine2011

Folate deficiency regulates expression of DNA polymerase β in response to oxidative stress.

Archana Unnikrishnan, Tom M Prychitko, Hiral V Patel, Mahbuba E Chowdhury, Amanda B Pilling, Lisa F Ventrella-Lucente, Erin V Papakonstantinou, Diane C Cabelof, Ahmad R Heydari

Abstract read
In one paragraph

Article in Free radical biology & medicine, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Neural Tube Defects and Folate Deficiency: Is DNA Repair Defective?International journal of molecular sciences · 2023
    Review
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Archana UnnikrishnanDepartment of Nutrition and Food Science, Science College of Liberal Arts and Sciences, Wayne State University, Detroit, MI 48202, USA.
Tom M Prychitko
Hiral V Patel
Mahbuba E Chowdhury
Amanda B Pilling
Lisa F Ventrella-Lucente
Erin V Papakonstantinou
Diane C Cabelof
Ahmad R Heydari
Wayne State University · USThe Barbara Ann Karmanos Cancer Institute · US

Funding

Base excision repair deficiency, folate and GI cancerR01CA121298 · NCI · WAYNE STATE UNIVERSITY · PI HEYDARI, AHMAD R · 2006 to 2009
$932k
NCI NIH HHS R01 CA121298
6 · The paper itself

Abstract

Folate deficiency has been shown to influence carcinogenesis by creating an imbalance in the base excision repair (BER) pathway, affecting BER homeostasis. The inability to mount a BER response to oxidative stress in a folate-deficient environment results in the accumulation of DNA repair intermediates, i.e., DNA strand breaks. Our data indicate that upregulation of β-pol expression in response to oxidative stress is inhibited by folate deficiency at the level of gene expression. Alteration in the expression of β-pol in a folate-deficient environment is not due to epigenetic changes in the core promoter of the β-pol gene, i.e., the CpG islands within the β-pol promoter remain unmethylated in the presence or absence of folate. However, the promoter analysis studies show a differential binding of regulatory factors to the -36 to -7 region (the folic acid-response region, FARR) within the core promoter of β-pol. Moreover, we observe a tight correlation between the level of binding of regulatory factors with the FARR and inhibition of β-pol expression. Based on these findings, we propose that folate deficiency results in an upregulation/stability of negative regulatory factors interacting with FARR, repressing the upregulation of the β-pol gene in response to oxidative stress.

Indexed as

DNA MethylationEpigenomicsGene Expression RegulationOxidative Stress8-Hydroxy-2'-DeoxyguanosineAnimalsBase SequenceCarcinoma, HepatocellularCell NucleusCells, CulturedCpG IslandsDeoxyguanosineDNA DamageDNA FootprintingDNA Polymerase betaDNA Repair8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNA Polymerase betaFolic Acid

Identifiers

PMID21070850
PMCPMC3018545
OpenAlexW2023305013

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.