Evidence map›Paper›PMID 21069826›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2010

Microarray identification of novel downstream targets of FoxD4L1/D5, a critical component of the neural ectodermal transcriptional network.

Bo Yan, Karen M Neilson, Sally A Moody

Open access · greenAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  4. Review
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  8. Retinoic acid signaling and neuronal differentiation.Cellular and molecular life sciences : CMLS · 2015
    Review
  9. Article
  10. Microarray identification of novel genes downstream of Six1, a critical factor in cranial placode, somite, and kidney development.Developmental dynamics : an official publication of the American Association of Anatomists · 2015
    Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Bo YanDepartment of Anatomy and Regenerative Biology, The George Washington University School of Medicine and Health Sciences, Washington, DC 20037, USA.
Karen M Neilson
Sally A Moody
George Washington University · US

Funding

NEURONAL LINEAGE DETERMINANTS IN EMBRYOSR01NS023158 · NINDS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI MOODY, SALLY ANN · 1986 to 2006
$2.2M
NINDS NIH HHS NS23158NINDS NIH HHS R01 NS023158
6 · The paper itself

Abstract

FoxD4L1/D5 is a forkhead transcription factor that functions as both a transcriptional activator and repressor. FoxD4L1/D5 acts upstream of several other neural transcription factors to maintain neural fate, regulate neural plate patterning, and delay the expression of neural differentiation factors. To identify a more complete list of downstream genes that participate in these earliest steps of neural ectodermal development, we carried out a microarray analysis comparing gene expression in control animal cap ectodermal explants (ACs), which will form epidermis, to that in FoxD4L1/D5-expressing ACs. Forty-four genes were tested for validation by RT-PCR of ACs and/or in situ hybridization assays in embryos; 86% of those genes up-regulated and 100% of those genes down-regulated in the microarray were altered accordingly in one of these independent assays. Eleven of these 44 genes are of unknown function, and we provide herein their developmental expression patterns to begin to reveal their roles in ectodermal development.

Indexed as

Gene Regulatory NetworksAnimalsEctodermGene Expression Regulation, DevelopmentalIn Situ HybridizationOligonucleotide Array Sequence AnalysisReverse Transcriptase Polymerase Chain ReactionXenopus laevisXenopus ProteinsXenopus Proteins

Identifiers

PMID21069826
PMCPMC3057538
OpenAlexW2122878913

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.