Evidence map›Paper›PMID 21068381›Full record

ArticleThe Journal of biological chemistry2011

The orphan nuclear receptor TR4 is a vitamin A-activated nuclear receptor.

X Edward Zhou, Kelly M Suino-Powell, Yong Xu, Cee-Wah Chan, Osamu Tanabe, Schoen W Kruse, Ross Reynolds, James Douglas Engel, H Eric Xu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 76 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

X Edward ZhouLaboratory of Structural Sciences and Drug Discovery, Van Andel Research Institute, Grand Rapids, Michigan 49503, USA. edward.zhou@vai.org
Kelly M Suino-Powell
Yong Xu
Cee-Wah Chan
Osamu Tanabe
Schoen W Kruse
Ross Reynolds
James Douglas Engel
H Eric Xu
Van Andel Institute · USUniversity of Michigan–Ann Arbor · USParker Hannifin (United States) · US

Funding

Structural Genomics of Orphan Nuclear ReceptorsR01DK071662 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2005 to 2017
$5.1M
Structure and Functions of Steroid Hormone ReceptorsR01DK066202 · NIDDK · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2006 to 2010
$2.0M
Structural and functional studies of the nuclear receptor PPARgammaR01HL089301 · NHLBI · VAN ANDEL RESEARCH INSTITUTE · PI XU, H ERIC · 2007 to 2010
$1.8M
NHLBI NIH HHS HL089301NHLBI NIH HHS R01 HL089301NIDDK NIH HHS DK066202NIDDK NIH HHS DK071662NIDDK NIH HHS R01 DK066202NIDDK NIH HHS R01 DK071662
6 · The paper itself

Abstract

Testicular receptors 2 and 4 (TR2/4) constitute a subgroup of orphan nuclear receptors that play important roles in spermatogenesis, lipid and lipoprotein regulation, and the development of the central nervous system. Currently, little is known about the structural features and the ligand regulation of these receptors. Here we report the crystal structure of the ligand-free TR4 ligand binding domain, which reveals an autorepressed conformation. The ligand binding pocket of TR4 is filled by the C-terminal half of helix 10, and the cofactor binding site is occupied by the AF-2 helix, thus preventing ligand-independent activation of the receptor. However, TR4 exhibits constitutive transcriptional activity on multiple promoters, which can be further potentiated by nuclear receptor coactivators. Mutations designed to disrupt cofactor binding, dimerization, or ligand binding substantially reduce the transcriptional activity of this receptor. Importantly, both retinol and retinoic acid are able to promote TR4 to recruit coactivators and to activate a TR4-regulated reporter. These findings demonstrate that TR4 is a ligand-regulated nuclear receptor and suggest that retinoids might have a much wider regulatory role via activation of orphan receptors such as TR4.

Indexed as

AnimalsBinding SitesChlorocebus aethiopsCOS CellsHumansMutationProtein Structure, SecondaryProtein Structure, TertiaryReceptors, SteroidReceptors, Thyroid HormoneStructure-Activity RelationshipVitamin AVitaminsNR2C2 protein, humanReceptors, SteroidReceptors, Thyroid HormoneVitamin AVitamins

Identifiers

PMID21068381
PMCPMC3024783
OpenAlexW1982297909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.