Evidence map›Paper›PMID 21068194›Full record

ArticleDrug metabolism and disposition: the biological fate of chemicals2011

Identification and validation of novel human pregnane X receptor activators among prescribed drugs via ligand-based virtual screening.

Yongmei Pan, Linhao Li, Gregory Kim, Sean Ekins, Hongbing Wang, Peter W Swaan

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Drug metabolism and disposition: the biological fate of chemicals, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Repurposing Approved Drugs as Inhibitors of KPharmaceutical research · 2019
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Potent and Selective Inhibition of Plasma Membrane Monoamine Transporter by HIV Protease Inhibitors.Drug metabolism and disposition: the biological fate of chemicals · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Pathway analysis for drug repositioning based on public database mining.Journal of chemical information and modeling · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Modulation of xenobiotic receptors by steroids.Molecules (Basel, Switzerland) · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yongmei PanDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, 20 Penn St., HSF2-621, Baltimore, MD 21201, USA.
Linhao Li
Gregory Kim
Sean Ekins
Hongbing Wang
Peter W Swaan
University of Maryland, Baltimore · US

Funding

Regulation of CYP2B6 in Human LIverR01DK061652 · NIDDK · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI WANG, HONGBING · 2003 to 2015
$3.7M
NIDDK NIH HHS R01 DK061652NIDDK NIH HHS R01-DK061652
6 · The paper itself

Abstract

Human pregnane X receptor (hPXR) plays a key role in regulating metabolism and clearance of endogenous and exogenous substances. Identification of novel hPXR activators among commercial drugs may aid in avoiding drug-drug interactions during coadministration. We applied ligand-based computational approaches for virtual screening of a commonly prescribed drug database (SCUT). Bayesian classification models were generated with a training set comprising 177 compounds using Fingerprints and 117 structural descriptors. A cell-based luciferase reporter assay was used for evaluation of chemical-mediated hPXR activation in HepG2 cells. All compounds were tested at 10 μM concentration with rifampicin and dimethyl sulfoxide as positive and negative controls, respectively. The Bayesian models showed specificity and overall prediction accuracy up to 0.92 and 0.69 for test set compounds. Screening the SCUT database with this model retrieved 105 hits and 17 compounds from the top 25 hits were chosen for in vitro testing. The reporter assay confirmed that nine drugs, i.e., fluticasone, nimodipine, nisoldipine, beclomethasone, finasteride, flunisolide, megestrol, secobarbital, and aminoglutethimide, were previously unidentified hPXR activators. Thus, the present study demonstrates that novel hPXR activators can be efficiently identified among U.S. Food and Drug Administration-approved and commonly prescribed drugs, which should lead to detection and prevention of potential drug-drug interactions.

Indexed as

Computational BiologyDrug InteractionsBayes TheoremDatabases, FactualDrug Evaluation, PreclinicalHep G2 CellsHumansLigandsLuciferasesModels, BiologicalPredictive Value of TestsPregnane X ReceptorPrescription DrugsPrincipal Component AnalysisReceptors, SteroidReproducibility of ResultsLigandsLuciferasesPregnane X ReceptorPrescription DrugsReceptors, Steroid

Identifiers

PMID21068194
PMCPMC3401010
OpenAlexW2152841520

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.