Evidence map›Paper›PMID 21062812›Full record

ArticleNucleic acids research2011

microRNA profiling in Epstein-Barr virus-associated B-cell lymphoma.

Jochen Imig, Natalie Motsch, Jia Yun Zhu, Stephanie Barth, Michal Okoniewski, Tanja Reineke, Marianne Tinguely, Alberto Faggioni, Pankaj Trivedi, Gunter Meister and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it, 150 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
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  5. Observational
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  15. miRNA in Molecular Diagnostics.Bioengineering (Basel, Switzerland) · 2022
    Review
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  18. Review
  19. Review
  20. Article

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Jochen ImigInstitute of Microbiology and Hygiene, Department of Virology, University Hospital of Saarland University, Homburg/Saar.
Natalie Motsch
Jia Yun Zhu
Stephanie Barth
Michal Okoniewski
Tanja Reineke
Marianne Tinguely
Alberto Faggioni
Pankaj Trivedi
Gunter Meister
Christoph Renner
Friedrich A Grässer
University of Zurich · CHCenter for Integrated Protein Science Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Epstein-Barr virus (EBV) is an oncogenic human Herpes virus found in ∼15% of diffuse large B-cell lymphoma (DLBCL). EBV encodes miRNAs and induces changes in the cellular miRNA profile of infected cells. MiRNAs are small, non-coding RNAs of ∼19-26 nt which suppress protein synthesis by inducing translational arrest or mRNA degradation. Here, we report a comprehensive miRNA-profiling study and show that hsa-miR-424, -223, -199a-3p, -199a-5p, -27b, -378, -26b, -23a, -23b were upregulated and hsa-miR-155, -20b, -221, -151-3p, -222, -29b/c, -106a were downregulated more than 2-fold due to EBV-infection of DLBCL. All known EBV miRNAs with the exception of the BHRF1 cluster as well as EBV-miR-BART15 and -20 were present. A computational analysis indicated potential targets such as c-MYB, LATS2, c-SKI and SIAH1. We show that c-MYB is targeted by miR-155 and miR-424, that the tumor suppressor SIAH1 is targeted by miR-424, and that c-SKI is potentially regulated by miR-155. Downregulation of SIAH1 protein in DLBCL was demonstrated by immunohistochemistry. The inhibition of SIAH1 is in line with the notion that EBV impedes various pro-apoptotic pathways during tumorigenesis. The down-modulation of the oncogenic c-MYB protein, although counter-intuitive, might be explained by its tight regulation in developmental processes.

Indexed as

beta CateninBinding SitesCell LineDNA-Binding ProteinsEpstein-Barr Virus InfectionsGene Expression ProfilingGene Expression Regulation, NeoplasticGene LibraryHerpesvirus 4, HumanHumansLymphoma, Large B-Cell, DiffuseMicroRNAsMolecular Sequence AnnotationNuclear ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-mybbeta CateninDNA-Binding ProteinsMicroRNAsNuclear ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-mybRNA, Small UntranslatedSeven in Absentia ProteinsSKI protein, humanUbiquitin-Protein LigasesWnt Proteins

Identifiers

PMID21062812
PMCPMC3061055
OpenAlexW2163506769

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.