Evidence map›Paper›PMID 21062495›Full record

ArticleTheoretical biology & medical modelling2010

Modeling CICR in rat ventricular myocytes: voltage clamp studies.

Abhilash Krishna, Liang Sun, Miguel Valderrábano, Philip T Palade, John W Clark

Open access · bronzeAbstract read
In one paragraph

Article in Theoretical biology & medical modelling, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Abhilash KrishnaDepartment of Electrical and Computer Engineering, Rice University, Houston, TX 77005, USA. jwc@rice.edu
Liang Sun
Miguel Valderrábano
Philip T Palade
John W Clark
Rice University · USHouston Methodist · USUniversity of Arkansas for Medical Sciences · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe past thirty-five years have seen an intense search for the molecular mechanisms underlying calcium-induced calcium-release (CICR) in cardiac myocytes, with voltage clamp (VC) studies being the leading tool employed. Several VC protocols including lowering of extracellular calcium to affect Ca²(+) loading of the sarcoplasmic reticulum (SR), and administration of blockers caffeine and thapsigargin have been utilized to probe the phenomena surrounding SR Ca²(+) release. Here, we develop a deterministic mathematical model of a rat ventricular myocyte under VC conditions, to better understand mechanisms underlying the response of an isolated cell to calcium perturbation. Motivation for the study was to pinpoint key control variables influencing CICR and examine the role of CICR in the context of a physiological control system regulating cytosolic Ca²(+) concentration ([Ca²(+)](myo)).

methodsThe cell model consists of an electrical-equivalent model for the cell membrane and a fluid-compartment model describing the flux of ionic species between the extracellular and several intracellular compartments (cell cytosol, SR and the dyadic coupling unit (DCU), in which resides the mechanistic basis of CICR). The DCU is described as a controller-actuator mechanism, internally stabilized by negative feedback control of the unit's two diametrically-opposed Ca²(+) channels (trigger-channel and release-channel). It releases Ca²(+) flux into the cyto-plasm and is in turn enclosed within a negative feedback loop involving the SERCA pump, regulating[Ca²(+)](myo).

resultsOur model reproduces measured VC data published by several laboratories, and generates graded Ca²(+) release at high Ca²(+) gain in a homeostatically-controlled environment where [Ca²(+)](myo) is precisely regulated. We elucidate the importance of the DCU elements in this process, particularly the role of the ryanodine receptor in controlling SR Ca²(+) release, its activation by trigger Ca²(+), and its refractory characteristics mediated by the luminal SR Ca²(+) sensor. Proper functioning of the DCU, sodium-calcium exchangers and SERCA pump are important in achieving negative feedback control and hence Ca²(+) homeostasis.

conclusionsWe examine the role of the above Ca²(+) regulating mechanisms in handling various types of induced disturbances in Ca²(+) levels by quantifying cellular Ca²(+) balance. Our model provides biophysically-based explanations of phenomena associated with CICR generating useful and testable hypotheses.

Indexed as

Models, BiologicalAnimalsCaffeineCalcineurinCalciumCalcium-Calmodulin-Dependent Protein Kinase Type 2Calcium ChannelsCalmodulinCell CompartmentationCell MembraneCytosolHeart VentriclesIon Channel GatingIon TransportKineticsMaleCaffeineCalcineurinCalciumCalcium-Calmodulin-Dependent Protein Kinase Type 2Calcium ChannelsCalmodulinRyanodine Receptor Calcium Release ChannelThapsigargin

Identifiers

PMID21062495
PMCPMC3245510
OpenAlexW1978417745

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.