Evidence map›Paper›PMID 21059273›Full record

ArticleJournal of biomedical science2010

A role of ygfZ in the Escherichia coli response to plumbagin challenge.

Ching-Nan Lin, Wan-Jr Syu, Wei-Sheng W Sun, Jenn-Wei Chen, Tai-Hung Chen, Ming-Jaw Don, Shao-Hung Wang

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

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  5. Cellular responses to reactive oxygen species are predicted from molecular mechanisms.Proceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Ching-Nan LinInstitute of Microbiology and Immunology, National Yang-Ming University, Taipei, 112 Taiwan.
Wan-Jr Syu
Wei-Sheng W Sun
Jenn-Wei Chen
Tai-Hung Chen
Ming-Jaw Don
Shao-Hung Wang
National Yang Ming Chiao Tung University · TWNational Research Institute of Chinese Medicine · TWNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plumbagin is found in many herbal plants and inhibits the growth of various bacteria. Escherichia coli strains are relatively resistant to this drug. The mechanism of resistance is not clear. Previous findings showed that plumbagin treatment triggered up-regulation of many genes in E. coli including ahpC, mdaB, nfnB, nfo, sodA, yggX and ygfZ. By analyzing minimal inhibition concentration and inhibition zones of plumbagin in various gene-disruption mutants, ygfZ and sodA were found critical for the bacteria to resist plumbagin toxicity. We also found that the roles of YgfZ and SodA in detoxifying plumbagin are independent of each other. This is because of the fact that ectopically expressed SodA reduced the superoxide stress but not restore the resistance of bacteria when encountering plumbagin at the absence of ygfZ. On the other hand, an ectopically expressed YgfZ was unable to complement and failed to rescue the plumbagin resistance when sodA was perturbed. Furthermore, mutagenesis analysis showed that residue Cys228 within YgfZ fingerprint region was critical for the resistance of E. coli to plumbagin. By solvent extraction and HPLC analysis to follow the fate of the chemical, it was found that plumbagin vanished apparently from the culture of YgfZ-expressing E. coli. A less toxic form, methylated plumbagin, which may represent one of the YgfZ-dependent metabolites, was found in the culture supernatant of the wild type E. coli but not in the ΔygfZ mutant. Our results showed that the presence of ygfZ is not only critical for the E coli resistance to plumbagin but also facilitates the plumbagin degradation.

Indexed as

Amino Acid SequenceAntineoplastic Agents, PhytogenicBacterial ProteinsCarrier ProteinsEscherichia coliEscherichia coli ProteinsGenetic Complementation TestMicrobial Sensitivity TestsMolecular Sequence DataMolecular StructureMutagenesis, Site-DirectedNaphthoquinonesSequence AlignmentSuperoxide DismutaseSuperoxidesAntineoplastic Agents, PhytogenicBacterial ProteinsCarrier ProteinsEscherichia coli ProteinsNaphthoquinonesplumbaginSodA protein, BacteriaSuperoxide DismutaseSuperoxidesYgfZ protein, E coli

Identifiers

PMID21059273
PMCPMC2989944
OpenAlexW2159362358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.