Evidence map›Paper›PMID 21058943›Full record

ArticleAnnals of human genetics2011

Replication of GWAS associations for GAK and MAPT in Parkinson's disease.

Shannon L Rhodes, Janet S Sinsheimer, Yvette Bordelon, Jeff M Bronstein, Beate Ritz

Open access · bronzeAbstract read
In one paragraph

Article in Annals of human genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 3 pooled it
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 3 syntheses or guidelines pooled it, 62 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Review
  6. Article
  7. Review
  8. Autophagy · 2025
    Article
  9. Cyclin-G-associated kinase GAK/dAux regulates autophagy initiation via ULK1/Atg1 in glia.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Tau in the Pathophysiology of Parkinson's Disease.Journal of molecular neuroscience : MN · 2021
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. International journal of molecular sciences · 2018
    Review
  16. Genetic risk factors in Parkinson's disease.Cell and tissue research · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Shannon L RhodesDepartment of Epidemiology, UCLA School of Public Health, Los Angeles, CA 90095-1772, USA. shannon.rhodes@ucla.edu
Janet S Sinsheimer
Yvette Bordelon
Jeff M Bronstein
Beate Ritz
University of California, Los Angeles · USUCLA Health · US

Funding

UCLA CENTER FOR THE STUDY OF PARKINSON'S DISEASEP50NS038367 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHESSELET, MARIE-FRANCOISE S · 1999 to 2011
$15.3M
Center for Gene-Environment Studies in Parkinson DiseaseU54ES012078 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHESSELET, MARIE-FRANCOISE S · 2002 to 2006
$7.1M
Project 4: Pesticides and Genes In PD: Studies In HumansP01ES016732 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CHESSELET, MARIE-FRANCOISE S · 2008 to 2012
$6.7M
PARKINSON'S DISEASES SUSCEPTIBILITY GENES AND PESTICIDESR01ES010544 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RITZ, BEATE R. · 2000 to 2015
$5.7M
NIEHS NIH HHS ES10544NIEHS NIH HHS ES16732NIEHS NIH HHS P01 ES016732NIEHS NIH HHS R01 ES010544NIEHS NIH HHS U54 ES012078NINDS NIH HHS NS 038367NINDS NIH HHS P50 NS038367
6 · The paper itself

Abstract

In the investigation of disease aetiology, the genome-wide association study (GWAS) provides a hypothesis-free investigation of the broader human genome and, as with all scientific investigations, replication is essential to validate any findings. To date, six GWAS have been performed to investigate the influence of common genetic variation in Parkinson's disease (PD) and only two associations have been replicated: alpha synuclein (SNCA) and microtubule-associated protein tau (MAPT), both PD candidate genes before GWAS. In our population-based study, we genotyped four of the top single-nucleotide polymorphisms (SNPs) from a previous study. By using the identical analytic method and genetic model in our independent sample, we provide evidence for replication of rs1724425 near MAPT (OR = 0.74, P= 0.0163) and rs1564282 in cyclin G-associated kinase (GAK; OR = 1.61, P= 0.0151); rs3775478 of multimerin 1 (MMRN1) (P= 0.30) and rs356229 of SNCA (P= 0.14) did not replicate in our study population. While MAPT has been considered a PD candidate gene and has been observed in association with PD in other GWAS, GAK is a new candidate for investigation in future studies.

Indexed as

AdultAgedAged, 80 and overalpha-SynucleinFemaleGenome-Wide Association StudyHumansIntracellular Signaling Peptides and ProteinsMaleMiddle AgedParkinson DiseasePolymorphism, Single NucleotideProtein Serine-Threonine KinasesReproducibility of Resultstau Proteinsalpha-SynucleinGAK protein, humanIntracellular Signaling Peptides and ProteinsMAPT protein, humanProtein Serine-Threonine KinasesSNCA protein, humantau Proteins

Identifiers

PMID21058943
PMCPMC3074465
OpenAlexW1541730469

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.