Evidence map›Paper›PMID 21056402›Full record

ArticleAmerican journal of human genetics2010

A common molecular mechanism underlies two phenotypically distinct 17p13.1 microdeletion syndromes.

Adam Shlien, Berivan Baskin, Maria Isabel W Achatz, Dimitrios J Stavropoulos, Kim E Nichols, Louanne Hudgins, Chantal F Morel, Margaret P Adam, Nataliya Zhukova, Lianne Rotin and 6 more

Abstract read
In one paragraph

Article in American journal of human genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  13. Li-fraumeni syndrome.Genes & cancer · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Adam ShlienThe Hospital for Sick Children, Toronto, ON, Canada.
Berivan Baskin
Maria Isabel W Achatz
Dimitrios J Stavropoulos
Kim E Nichols
Louanne Hudgins
Chantal F Morel
Margaret P Adam
Nataliya Zhukova
Lianne Rotin
Ana Novokmet
Harriet Druker
Mary Shago
Peter N Ray
Pierre Hainaut
David Malkin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA copy-number variations (CNVs) underlie many neuropsychiatric conditions, but they have been less studied in cancer. We report the association of a 17p13.1 CNV, childhood-onset developmental delay (DD), and cancer. Through a screen of over 4000 patients with diverse diagnoses, we identified eight probands harboring microdeletions at TP53 (17p13.1). We used a purpose-built high-resolution array with 93.75% breakpoint accuracy to fine map these microdeletions. Four patients were found to have a common phenotype including DD, hypotonia, and hand and foot abnormalities, constituting a unique syndrome. Notably, these patients were not affected with cancer. Moreover, none of the TP53-deletion patients affected with cancer (n = 4) had neurocognitive impairments. DD patients have larger deletions, which encompass but do not disrupt TP53, whereas cancer-affected patients harbor CNVs with at least one breakpoint within TP53. Most 17p13.1 deletions arise by Alu-mediated nonallelic homologous recombination. Furthermore, we identify a critical genomic region associated with DD and containing six underexpressed genes. We conclude that, although they overlap, 17p13.1 CNVs are associated with distinct phenotypes depending on the position of the breakpoint with respect to TP53. Further, detailed characterization of breakpoints revealed a common formation signature. Future studies should consider whether other loci in the genome also give rise to phenotypically distinct disorders by means of a common mechanism, resulting in a similar formation signature.

Indexed as

AdultChildChild, PreschoolChromosome DeletionChromosomes, Human, Pair 17Developmental DisabilitiesDNA Copy Number VariationsGenes, p53HumansNeoplasmsPhenotypeSyndrome

Identifiers

PMID21056402
PMCPMC2978979

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.