Evidence map›Paper›PMID 21055414›Full record

ArticleMechanisms of ageing and development

Gene expression in the hippocampus: regionally specific effects of aging and caloric restriction.

Zane Zeier, Irina Madorsky, Ying Xu, William O Ogle, Lucia Notterpek, Thomas C Foster

Abstract read
In one paragraph

Article in Mechanisms of ageing and development. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Article
  8. Article
  9. Hippocampal Subregion Transcriptomic Profiles Reflect Strategy Selection during Cognitive Aging.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  10. Article
  11. Article
  12. Review
  13. Senescent neurophysiology: CaNeurobiology of learning and memory · 2019
    Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Zane ZeierDepartment of Neuroscience, McKnight Brain Institute, University of Florida, P.O. Box 100244, Gainesville, FL 32610-0244, USA.
Irina Madorsky
Ying Xu
William O Ogle
Lucia Notterpek
Thomas C Foster
University of Florida · US

Funding

University of Florida Older Americans Independence Center (OAIC)P30AG028740 · NIA · UNIVERSITY OF FLORIDA · PI CHRISTIAAN LEEUWENBURGH · 2007 to 2026
$22.8M
Cellular events in heritable peripheral neuropathiesR01NS041012 · NINDS · UNIVERSITY OF FLORIDA · PI NOTTERPEK, LUCIA · 2001 to 2013
$3.5M
Signaling cascades and memory deficits during agingR37AG036800 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2010 to 2018
$2.6M
MECHANISMS FOR ALTERED SYNAPTIC FUNCTION DURING AGINGR01AG014979 · NIA · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI FOSTER, THOMAS C · 1998 to 2011
$2.5M
ESTROGEN AND COGNITION OVER THE LIFESPANR01MH059891 · NIMH · UNIVERSITY OF KENTUCKY · PI FOSTER, THOMAS C · 2000 to 2009
$2.2M
Estrogen and cognition over the lifespanR56AG037984 · NIA · UNIVERSITY OF FLORIDA · PI FOSTER, THOMAS C · 2010 to 2010
$271k
NIA NIH HHS AG14979NIA NIH HHS P30 AG028740NIA NIH HHS R01 AG014979NIA NIH HHS R01 AG036800NIA NIH HHS R37 AG036800NIA NIH HHS R56 AG037984NIMH NIH HHS MH059891NIMH NIH HHS R01 MH059891NINDS NIH HHS R01 NS041012
6 · The paper itself

Abstract

We measured changes in gene expression, induced by aging and caloric restriction (CR), in three hippocampal subregions. When analysis included all regions, aging was associated with expression of genes linked to mitochondrial dysfunction, inflammation, and stress responses, and in some cases, expression was reversed by CR. An age-related increase in ubiquintination was observed, including increased expression of ubiquitin conjugating enzyme genes and cytosolic ubiquitin immunoreactivity. CR decreased cytosolic ubiquitin and upregulated deubiquitinating genes. Region specific analyses indicated that CA1 was more susceptible to aging stress, exhibiting a greater number of altered genes relative to CA3 and the dentate gyrus (DG), and an enrichment of genes related to the immune response and apoptosis. CA3 and the DG were more responsive to CR, exhibiting marked changes in the total number of genes across diet conditions, reversal of age-related changes in p53 signaling, glucocorticoid receptor signaling, and enrichment of genes related to cell survival and neurotrophic signaling. Finally, CR differentially influenced genes for synaptic plasticity in CA1 and CA3. It is concluded that regional disparity in response to aging and CR relates to differences in vulnerability to stressors, the availability of neurotrophic, and cell survival mechanisms, and differences in cell function.

Indexed as

Caloric RestrictionGene ExpressionAgingAnimalsApoptosisCell SurvivalGene Expression ProfilingGenes, MitochondrialHippocampusMaleOligonucleotide Array Sequence AnalysisOxidative PhosphorylationRatsRats, Inbred BNRats, Inbred F344Signal Transduction

Identifiers

PMID21055414
PMCPMC3032012
OpenAlexW2041335853

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.