Evidence map›Paper›PMID 21051540›Full record

ArticleThe Journal of biological chemistry2011

Oct1 is a switchable, bipotential stabilizer of repressed and inducible transcriptional states.

Arvind Shakya, Jinsuk Kang, Jeffrey Chumley, Matthew A Williams, Dean Tantin

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

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  9. ABCB10 Loss Reduces CD4Journal of immunology (Baltimore, Md. : 1950) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arvind ShakyaDepartment of Pathology, University of Utah School of Medicine, Salt Lake City, Utah 84112, USA.
Jinsuk Kang
Jeffrey Chumley
Matthew A Williams
Dean Tantin
University of Utah · US

Funding

Gene regulation of Oct1: implications of metabolism, stemness and cancerR21CA141009 · NCI · UNIVERSITY OF UTAH · PI TANTIN, DEAN · 2010 to 2011
$354k
NCI NIH HHS 1R21CA141009NCI NIH HHS R21 CA141009
6 · The paper itself

Abstract

Little is known regarding how the Oct1 transcription factor regulates target gene expression. Using murine fibroblasts and two target genes, Polr2a and Ahcy, we show that Oct1 recruits the Jmjd1a/KDM3A lysine demethylase to catalyze the removal of the inhibitory histone H3K9 dimethyl mark and block repression. Using purified murine T cells and the Il2 target locus, and a colon cancer cell line and the Cdx2 target locus, we show that Oct1 recruits the NuRD chromatin-remodeling complex to promote a repressed state, but in a regulated manner can switch to a different capacity and mediate Jmjd1a recruitment to block repression. These findings indicate that Oct1 maintains repression through a mechanism involving NuRD and maintains poised gene expression states through an antirepression mechanism involving Jmjd1a. We propose that, rather than acting as a primary trigger of gene activation or repression, Oct1 is a switchable stabilizer of repressed and inducible states.

Indexed as

Transcription, GeneticAnimalsBase SequenceCDX2 Transcription FactorCell Line, TumorFibroblastsGenetic LociHomeodomain ProteinsHumansJumonji Domain-Containing Histone DemethylasesMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceMolecular Sequence DataOrganic Cation Transporter 1Promoter Regions, GeneticTetradecanoylphorbol AcetateCDX2 protein, humanCDX2 Transcription FactorHomeodomain ProteinsJumonji Domain-Containing Histone DemethylasesKdm3a protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexOrganic Cation Transporter 1Tetradecanoylphorbol Acetate

Identifiers

PMID21051540
PMCPMC3013004
OpenAlexW2025779550

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.