Evidence map›Paper›PMID 21048112›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2010

Broad cross-reactive TCR repertoires recognizing dissimilar Epstein-Barr and influenza A virus epitopes.

Shalyn C Clute, Yuri N Naumov, Levi B Watkin, Nuray Aslan, John L Sullivan, David A Thorley-Lawson, Katherine Luzuriaga, Raymond M Welsh, Roberto Puzone, Franco Celada and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 57 citations in OpenAlex.

  1. Identification of multiple public TCR repertoires in chronic beryllium disease.Journal of immunology (Baltimore, Md. : 1950) · 2014
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  10. MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Shalyn C CluteDepartment of Pathology and Program in Immunology and Virology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Yuri N Naumov
Levi B Watkin
Nuray Aslan
John L Sullivan
David A Thorley-Lawson
Katherine Luzuriaga
Raymond M Welsh
Roberto Puzone
Franco Celada
Liisa K Selin
University of Massachusetts Chan Medical School · USNational Cancer Research Institute · GBNew York University Langone Orthopedic Hospital · USTufts University · US

Funding

Tetramer CoreP01AI049320 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 2001 to 2016
$22.3M
PILOT AND FEASIBILITY PROGRAMP30DK032520 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI CZECH, MICHAEL P · 1986 to 2010
$14.6M
UMASS MEDICAL CENTER FOR AIDS RESEARCHP30AI042845 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 1998 to 2012
$13.0M
TRAINING IN IMMUNOLOGY (COMPETITIVE RENEWAL OF AI07439)T32AI007349 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STERN, LAWRENCE J. · 1989 to 2024
$4.5M
To model crossreacting T-memory of virus-infected miceR01AI054455 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CELADA, FRANCO · 2003 to 2009
$2.8M
NIAID NIH HHS 5 T32 AI-07349-16NIAID NIH HHS AI-054455NIAID NIH HHS AI-42845NIAID NIH HHS AI-49320NIAID NIH HHS P01 AI049320NIAID NIH HHS P30 AI042845NIAID NIH HHS R01 AI054455NIAID NIH HHS T32 AI007349NIDDK NIH HHS P30 DK032520PHS HHS DR-32520
6 · The paper itself

Abstract

Memory T cells cross-reactive with epitopes encoded by related or even unrelated viruses may alter the immune response and pathogenesis of infection by a process known as heterologous immunity. Because a challenge virus epitope may react with only a subset of the T cell repertoire in a cross-reactive epitope-specific memory pool, the vigorous cross-reactive response may be narrowly focused, or oligoclonal. We show in this article, by examining human T cell cross-reactivity between the HLA-A2-restricted influenza A virus-encoded M1(58-66) epitope (GILGFVFTL) and the dissimilar Epstein-Barr virus-encoded BMLF1(280-288) epitope (GLCTLVAML), that, under some conditions, heterologous immunity can lead to a significant broadening, rather than a narrowing, of the TCR repertoire. We suggest that dissimilar cross-reactive epitopes might generate a broad, rather than a narrow, T cell repertoire if there is a lack of dominant high-affinity clones; this hypothesis is supported by computer simulation.

Indexed as

AdolescentAdultCD8-Positive T-LymphocytesClone CellsCross ReactionsEpitopes, T-LymphocyteHerpesvirus 4, HumanHLA-A2 AntigenHumansImmunodominant EpitopesInfluenza A virusMiddle AgedOligopeptidesPeptide FragmentsReceptors, Antigen, T-CellViral Matrix ProteinsEpitopes, T-Lymphocyteglycyl-leucyl-cysteinyl-threonyl-leucyl-valyl-alanyl-methionyl-leucineHLA-A2 AntigenImmunodominant Epitopesinfluenza matrix peptide (58-66)M1 protein, Influenza A virusOligopeptidesPeptide FragmentsReceptors, Antigen, T-CellViral Matrix Proteins

Identifiers

PMID21048112
PMCPMC3738202
OpenAlexW2164989695

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.