ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2010
SNP discovery and linkage map construction in cultivated tomato.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.
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Who cites it
45 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Unraveling the genetic basis of quantitative resistance to diseases in tomato: a meta-QTL analysis and mining of transcript profiles.Plant cell reports · 2024Pooled it
- Near-complete genome assembly of tomato (Plant biotechnology (Tokyo, Japan) · 2024Article
- Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum).DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- Advances in Understanding and Harnessing the Molecular Regulatory Mechanisms of Vegetable Quality.Frontiers in plant science · 2022Review
- Four genetic loci control compact plant size with yellow pear-shaped fruit in ornamental tomato (Solanum lycopersicum L.).The plant genome · 2020Article
- Analysis of Crossover Events and Allele Segregation Distortion in Interspecific Citrus Hybrids by Single Pollen Genotyping.Frontiers in plant science · 2020Article
- Identification of drought-responsive microRNAs in tomato using high-throughput sequencing.Functional & integrative genomics · 2018Article
- Bayesian QTL mapping using genome-wide SSR markers and segregating population derived from a cross of two commercial FTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.).Scientific reports · 2017Article
- The historical role of species from the Solanaceae plant family in genetic research.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Review
- Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.Nature protocols · 2016Article
- The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis.Plant physiology · 2016Article
- High-density linkage mapping and distribution of segregation distortion regions in the oak genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Nitric Oxide Overproduction in TomatoFrontiers in plant science · 2016Article
- Using a Candidate Gene-Based Genetic Linkage Map to Identify QTL for Winter Survival in Perennial Ryegrass.PloS one · 2016Article
- Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.Plant biotechnology journal · 2016Article
- Article
- Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus.BMC genomics · 2015Article
- Exploring a Tomato Landraces Collection for Fruit-Related Traits by the Aid of a High-Throughput Genomic Platform.PloS one · 2015Article
- Functional genomics of tomato: opportunities and challenges in post-genome NGS era.Journal of biosciences · 2014Review
Corrections and comments
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Authors and funding
16 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Few intraspecific genetic linkage maps have been reported for cultivated tomato, mainly because genetic diversity within Solanum lycopersicum is much less than that between tomato species. Single nucleotide polymorphisms (SNPs), the most abundant source of genomic variation, are the most promising source of polymorphisms for the construction of linkage maps for closely related intraspecific lines. In this study, we developed SNP markers based on expressed sequence tags for the construction of intraspecific linkage maps in tomato. Out of the 5607 SNP positions detected through in silico analysis, 1536 were selected for high-throughput genotyping of two mapping populations derived from crosses between 'Micro-Tom' and either 'Ailsa Craig' or 'M82'. A total of 1137 markers, including 793 out of the 1338 successfully genotyped SNPs, along with 344 simple sequence repeat and intronic polymorphism markers, were mapped onto two linkage maps, which covered 1467.8 and 1422.7 cM, respectively. The SNP markers developed were then screened against cultivated tomato lines in order to estimate the transferability of these SNPs to other breeding materials. The molecular markers and linkage maps represent a milestone in the genomics and genetics, and are the first step toward molecular breeding of cultivated tomato. Information on the DNA markers, linkage maps, and SNP genotypes for these tomato lines is available at http://www.kazusa.or.jp/tomato/.
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