Evidence map›Paper›PMID 21041929›Full record

ArticleActa crystallographica. Section D, Biological crystallography2010

Protonation states of histidine and other key residues in deoxy normal human adult hemoglobin by neutron protein crystallography.

Andrey Kovalevsky, Toshiyuki Chatake, Naoya Shibayama, Sam Yong Park, Takuya Ishikawa, Marat Mustyakimov, S Zoe Fisher, Paul Langan, Yukio Morimoto

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors.

Andrey KovalevskyBioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA. ayk@lanl.gov
Toshiyuki Chatake
Naoya Shibayama
Sam Yong Park
Takuya Ishikawa
Marat Mustyakimov
S Zoe Fisher
Paul Langan
Yukio Morimoto

Funding

Computational Tools for Neutron Protein CrystallographyR01GM071939 · NIGMS · UT-BATTELLE, LLC-OAK RIDGE NATIONAL LAB · PI COATES, LEIGHTON · 2004 to 2019
$4.3M
NIGMS NIH HHS 1R01GM071939-01NIGMS NIH HHS R01 GM071939
6 · The paper itself

Abstract

The protonation states of the histidine residues key to the function of deoxy (T-state) human hemoglobin have been investigated using neutron protein crystallography. These residues can reversibly bind protons, thereby regulating the oxygen affinity of hemoglobin. By examining the OMIT F(o)-F(c) and 2F(o)-F(c) neutron scattering maps, the protonation states of 35 of the 38 His residues were directly determined. The remaining three residues were found to be disordered. Surprisingly, seven pairs of His residues from equivalent α or β chains, αHis20, αHis50, αHis58, αHis89, βHis63, βHis143 and βHis146, have different protonation states. The protonation of distal His residues in the α(1)β(1) heterodimer and the protonation of αHis103 in both subunits demonstrates that these residues may participate in buffering hydrogen ions and may influence the oxygen binding. The observed protonation states of His residues are compared with their ΔpK(a) between the deoxy and oxy states. Examination of inter-subunit interfaces provided evidence for interactions that are essential for the stability of the deoxy tertiary structure.

Indexed as

NeutronsProtonsAdultHemoglobinsHistidineHumansModels, MolecularNeutron DiffractionOxygenProtein ConformationProtein SubunitsdeoxyhemoglobinHemoglobinsHistidineOxygenProtein SubunitsProtons

Identifiers

PMID21041929
PMCPMC2967419

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.