Evidence map›Paper›PMID 21041479›Full record

ArticleMolecular and cellular biology2011

A simple topological filter in a eukaryotic transposon as a mechanism to suppress genome instability.

Corentin Claeys Bouuaert, Danxu Liu, Ronald Chalmers

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Jumping Ahead withViruses · 2021
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Structural Determinants of Sleeping Beauty Transposase Activity.Molecular therapy : the journal of the American Society of Gene Therapy · 2016
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Target capture during Mos1 transposition.The Journal of biological chemistry · 2014
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. The emerging diversity of transpososome architectures.Quarterly reviews of biophysics · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Corentin Claeys BouuaertSchool of Biomedical Sciences, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, United Kingdom. chalmers@nottingham.ac.uk.
Danxu Liu
Ronald Chalmers

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust
6 · The paper itself

Abstract

DNA transposition takes place within a higher-order complex known as the transpososome. Almost everything known about its assembly has been gleaned from bacterial transposons. Here we present a detailed analysis of transpososome assembly in the human Hsmar1 element. The transpososome is nominally symmetrical, consisting of two identical transposon ends and a dimer of transposase. However, after the transposase dimer has captured the first transposon end, an asymmetry is introduced, raising a barrier against recruitment of the second end. The barrier can be overcome by right-handed plectonemic intertwining of the transposon ends. This likely occurs mainly during transcription and episodes of nucleosome remodeling. Plectonemic intertwining favors only synapsis of closely linked transposon ends in the inverted-repeat configuration and therefore suppresses the promiscuous synapsis of distant transposon ends, which initiate McClintock's chromosomal breakage-fusion-bridge cycles in maize. We also show that synapsis of the transposon ends is a prerequisite for the first catalytic step. This provides constraints on the enzymatic mechanism of the double-strand breaks in mariner transposition, excluding the most prevalent of the current models.

Indexed as

Genomic InstabilityCatalysisChromosome PairingDNA, SuperhelicalDNA Transposable ElementsEukaryotaHumansNucleic Acid ConformationTransposasesDNA, SuperhelicalDNA Transposable ElementsTransposases

Identifiers

PMID21041479
PMCPMC3019980

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.