Evidence map›Paper›PMID 21038867›Full record

ArticleJournal of the American Chemical Society2010

Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy.

Nathan J Baird, Steven J Ludtke, Htet Khant, Wah Chiu, Tao Pan, Tobin R Sosnick

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Tertiary folds of the SL5 RNA from the 5' proximal region of SARS-CoV-2 and related coronaviruses.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  5. Review
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  7. Article
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  13. Site-specific platinum(II) cross-linking in a ribozyme active site.Journal of the American Chemical Society · 2012
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nathan J BairdDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, United States.
Steven J Ludtke
Htet Khant
Wah Chiu
Tao Pan
Tobin R Sosnick

Funding

ZERNIKE PHASE PLATE CRYOEM IN OKAZAKIP41RR002250 · NCRR · UNIVERSITY OF ARIZONA · PI CHIU, WAH · 1985 to 2011
$22.1M
KINETIC/THERMODYNAMIC/STRUCTURAL STUDIES OF RNA FOLDINGR01GM057880 · NIGMS · UNIVERSITY OF CHICAGO · PI PAN, TAO · 1998 to 2011
$2.6M
Kinetic/Thermodynamic/Structural Studies of RNA FoldingR56GM057880 · NIGMS · UNIVERSITY OF CHICAGO · PI PAN, TAO · 2007 to 2007
$307k
NCRR NIH HHS P41 RR002250NCRR NIH HHS P41RR002250NIGMS NIH HHS GM57880NIGMS NIH HHS R01 GM057880NIGMS NIH HHS R56 GM057880
6 · The paper itself

Abstract

RNA folding occurs via a series of transitions between metastable intermediate states. It is unknown whether folding intermediates are discrete structures folding along defined pathways or heterogeneous ensembles folding along broad landscapes. We use cryo-electron microscopy and single-particle image reconstruction to determine the structure of the major folding intermediate of the specificity domain of a ribonuclease P ribozyme. Our results support the existence of a discrete conformation for this folding intermediate.

Indexed as

Cryoelectron MicroscopyAmino Acid SequenceBacillusCircular DichroismModels, MolecularMolecular Sequence DataRibonuclease PRibonuclease P

Identifiers

PMID21038867
PMCPMC2988076

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.