Evidence map›Paper›PMID 21037293›Full record

ArticleApplied and environmental microbiology2011

Transcriptomic and phenotypic analyses identify coregulated, overlapping regulons among PrfA, CtsR, HrcA, and the alternative sigma factors sigmaB, sigmaC, sigmaH, and sigmaL in Listeria monocytogenes.

Soraya Chaturongakul, Sarita Raengpradub, M Elizabeth Palmer, Teresa M Bergholz, Renato H Orsi, Yuewei Hu, Juliane Ollinger, Martin Wiedmann, Kathryn J Boor

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 110 citations in OpenAlex.

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  6. ProPr54 web server: predicting σNAR genomics and bioinformatics · 2025
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  17. Frontiers in microbiology · 2021
    Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Soraya ChaturongakulDepartment of Microbiology, Faculty of Science, Mahidol University, Bangkok, Thailand. scsch@mahidol.ac.th
Sarita Raengpradub
M Elizabeth Palmer
Teresa M Bergholz
Renato H Orsi
Yuewei Hu
Juliane Ollinger
Martin Wiedmann
Kathryn J Boor
Cornell University · USMahidol University · TH

Funding

Sigma B and stress response in Listeria monocytogenesR01AI052151 · NIAID · CORNELL UNIVERSITY ITHACA · PI BOOR, KATHRYN J · 2003 to 2012
$2.7M
NIAID NIH HHS R01 AI052151NIAID NIH HHS R01-AI052151-01A1
6 · The paper itself

Abstract

A set of seven Listeria monocytogenes 10403S mutant strains, each bearing an in-frame null mutation in a gene encoding a key regulatory protein, was used to characterize transcriptional networks in L. monocytogenes; the seven regulatory proteins addressed include all four L. monocytogenes alternative sigma factors (σ(B), σ(C), σ(H), and σ(L)), the virulence gene regulator PrfA, and the heat shock-related negative regulators CtsR and HrcA. Whole-genome microarray analyses, used to identify regulons for each of these 7 transcriptional regulators, showed considerable overlap among regulons. Among 188 genes controlled by more than one regulator, 176 were coregulated by σ(B), including 92 genes regulated by both σ(B) and σ(H) (with 18 of these genes coregulated by σ(B), σ(H), and at least one additional regulator) and 31 genes regulated by both σ(B) and σ(L) (with 10 of these genes coregulated by σ(B), σ(L), and at least one additional regulator). Comparative phenotypic characterization measuring acid resistance, heat resistance, intracellular growth in J774 cells, invasion into Caco-2 epithelial cells, and virulence in the guinea pig model indicated contributions of (i) σ(B) to acid resistance, (ii) CtsR to heat resistance, and (iii) PrfA, σ(B), and CtsR to virulence-associated characteristics. Loss of the remaining transcriptional regulators (i.e., sigH, sigL, or sigC) resulted in limited phenotypic consequences associated with stress survival and virulence. Identification of overlaps among the regulons provides strong evidence supporting the existence of complex regulatory networks that appear to provide the cell with regulatory redundancies, along with the ability to fine-tune gene expression in response to rapidly changing environmental conditions.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialRegulonAnimalsBacterial ProteinsCell LineDisease Models, AnimalEpithelial CellsGene DeletionGuinea PigsListeria monocytogenesListeriosisMacrophagesMicroarray AnalysisPeptide Termination FactorsRepressor ProteinsBacterial ProteinsCtsR protein, bacteriaPeptide Termination FactorsPrfA protein, Listeria monocytogenesRepressor ProteinsSigma Factor

Identifiers

PMID21037293
PMCPMC3019704
OpenAlexW2064402653

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.