Evidence map›Paper›PMID 21036380›Full record

ArticleVirology2011

Identification of amino acid substitutions associated with neutralization phenotype in the human immunodeficiency virus type-1 subtype C gp120.

Jennifer L Kirchherr, Jennifer Hamilton, Xiaozhi Lu, S Gnanakaran, Mark Muldoon, Marcus Daniels, Webster Kasongo, Victor Chalwe, Chanda Mulenga, Lawrence Mwananyanda and 6 more

Open access · greenAbstract read
In one paragraph

Article in Virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
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  7. Article
  8. Article
  9. The Antibody Response against HIV-1.Cold Spring Harbor perspectives in medicine · 2012
    Review
  10. Article
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Jennifer L KirchherrDuke Human Vaccine Institute, Duke University Medical Center, Durham, NC 27710, USA.
Jennifer Hamilton
Xiaozhi Lu
S Gnanakaran
Mark Muldoon
Marcus Daniels
Webster Kasongo
Victor Chalwe
Chanda Mulenga
Lawrence Mwananyanda
Rosemary M Musonda
Xing Yuan
David C Montefiori
Bette T Korber
Barton F Haynes
Feng Gao
Duke Medical Center · USTropical Diseases Research Centre · ZMLos Alamos National Laboratory · USSanta Fe Institute · USUniversity of Manchester · GB

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2005 to 2005
$14.9M
Neutralizing Antibody Induction by Centralized GenesP01AI061734 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F. · 2005 to 2009
$11.7M
USE OF THE SHIV AND SIV MODELS OF AIDS FOR HIV VACCINE DEVELOPMENTP01AI035351 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 1999 to 2003
$4.9M
HIV Vaccine Trial Site Development for ZambiaR03AI054155 · NIAID · ZAMBIA TROPICAL DISEASES RES CTR · PI MWANANYANDA, LAWRENCE · 2002 to 2003
$108k
NIAID NIH HHS AI067854NIAID NIH HHS AI64518NIAID NIH HHS P01 AI035351NIAID NIH HHS P01 AI061734NIAID NIH HHS P01 AI35351NIAID NIH HHS P30 AI064518NIAID NIH HHS R03 AI054155NIAID NIH HHS U01 AI067854NIAID NIH HHS U19 AI067854
6 · The paper itself

Abstract

Neutralizing antibodies (Nabs) are thought to play an important role in prevention and control of HIV-1 infection and should be targeted by an AIDS vaccine. It is critical to understand how HIV-1 induces Nabs by analyzing viral sequences in both tested viruses and sera. Neutralization susceptibility to antibodies in autologous and heterologous plasma was determined for multiple Envs (3-6) from each of 15 subtype-C-infected individuals. Heterologous neutralization was divided into two distinct groups: plasma with strong, cross-reactive neutralization (n=9) and plasma with weak neutralization (n=6). Plasma with cross-reactive heterologous Nabs also more potently neutralized contemporaneous autologous viruses. Analysis of Env sequences in plasma from both groups revealed a three-amino-acid substitution pattern in the V4 region that was associated with greater neutralization potency and breadth. Identification of such potential neutralization signatures may have important implications for the development of HIV-1 vaccines capable of inducing Nabs to subtype C HIV-1.

Indexed as

AdultAmino Acid SubstitutionAntibodies, NeutralizingCross ReactionsEpitopesFemaleHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansMaleMiddle AgedMolecular Sequence DataNeutralization TestsSequence Analysis, DNAAntibodies, NeutralizingEpitopesgp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120

Identifiers

PMID21036380
PMCPMC3007099
OpenAlexW2013234834

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.